Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_028820.1 Length=162101 Score E Sequences producing significant alignments: (Bits) Value seq26767 129 6e-25 seq244327 125 7e-24 seq249537 87.8 2e-12 >seq26767 Length=1149 Score = 129 bits (142), Expect = 6e-25 Identities = 295/439 (67%), Gaps = 4/439 (1%) Strand=Plus/Plus Query 140176 TTAATTTGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACCTTTATTGTTC 140235 |||||||| || ||||||| | ||| || | | ||||| |||| || |||| || Sbjct 43 TTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTATTT 102 Query 140236 TTCAGTACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAGTACAAAGTAGCTGCG 140295 || | || | | |||| | ||||| |||||| || ||||| | | ||| || || Sbjct 103 TTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCCGCT 162 Query 140296 CCACCGCGAATGCCGCCTTGAGAACAAGATTTAACAGAAGCTAAGTGAGT-TTTCCAGAA 140354 ||||| | || || ||||||||||| ||||| |||| | || | | | ||| | || Sbjct 163 CCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCA-CTTTGAAAATGTTTATAAAA 221 Query 140355 TGGAATAACGCCTGTATGACGAACTTCACCAGCGCCAATCTTAGAACCTTCAGCACGATA 140414 |||||| || |||||| |||| ||| | ||| | |||| | |||||| Sbjct 222 AGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGCACGAAT 281 Query 140415 CATTCCAGCGTTAACACCAATACCGGCACGTTTGCTGATATATTTGATGATTGCTTTGTT 140474 ||||||| |||| |||||| || || |||| | |||||| | || | | | Sbjct 282 TTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACTAGT 341 Query 140475 TACTGCATTAATACTGTCAAGACTATCGCCGCCTTCAATAACAACGCAAGAACTGAACTG 140534 || |||||| || ||| |||| | | |||||| | ||| || || || || || Sbjct 342 AGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGAGCTAAATTG 401 Query 140535 GCGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAA-TCTGACGTTTAG 140593 ||||| ||||| | || || | ||||||||| || || | ||||| | ||| || | Sbjct 402 TCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTTGAAAGTT-G 460 Query 140594 ATACGGCATTATAGAAACG 140612 | | ||||||||| ||||| Sbjct 461 AAATGGCATTATAAAAACG 479 >seq244327 Length=1302 Score = 125 bits (138), Expect = 7e-24 Identities = 260/384 (68%), Gaps = 5/384 (1%) Strand=Plus/Plus Query 135451 TTAATTAATACATCGTCATATAATTTACTAATAGATTCAGCTCGAGCCATGATAGCTTCA 135510 || |||||| |||||||| || | | |||| || ||||||| | | ||| || | Sbjct 738 TTTATTAAT---TCGTCATAGTATATGCAAATATTTTTAGCTCGATCGTTAATATGTTTA 794 Query 135511 TCTAGAATAATCTCATCAAAGATTTTACCGGGATCAGAGAACAGATTTCGCATGATATGA 135570 | |||||| |||||||| ||| | ||| | | | ||||| || |||||| Sbjct 795 TTGGAAATAATATCATCAAATATTAAAGATGGAGAATTAACAATATTTCTAATAATATGA 854 Query 135571 GTATAAGAACGACTATGGATAGTTTCAGAGAAAGTCCATGTAGCAACCCATGTATCTAAT 135630 ||||||||||| || |||||||| || |||| |||||| ||| ||| || |||||| Sbjct 855 GTATAAGAACGTGAGTGAATAGTTTCCGAAAAAGACCATGTTTCAATCCAGGTTTCTAAT 914 Query 135631 GCTGGGTCAGAAATAAGTGGCATCAATACCGACG-AAGGTGCACGACCTTGGATAGTGTC 135689 | || |||||||| ||| | || | | | | ||| | ||||| |||| ||| Sbjct 915 TCCGGAATAGAAATAATTGGTA-GAAAAGCAATGTTAGGACTTCTTCCTTGAATAGAGTC 973 Query 135690 TAATAATGACTGATATTTCAAATTATCAACAAAAATATTTTGTTGGTGAGGAAGAAGGCG 135749 |||||||| |||||||| |||||| || |||||||| || || || | | | Sbjct 974 TAATAATGTTTGATATTTTAAATTACTAAGAAAAATATGTTTTTCATGTTCAGGTAAATT 1033 Query 135750 GTCGAATTGGCCTTTATCTGTCATTAGATTAACTTCTTCAGGTCGCCaaaaaaaTCCAAG 135809 | || | | ||||| |||| | ||||||||||| ||||||||| || Sbjct 1034 TTGAAAATCTATTCTATCTCGAGAGAGATCTATTTCTTCAGGTCTCCAAAAAAAAGAGAG 1093 Query 135810 TTGCTTTTCTGTCAATTCTTCAAA 135833 ||| ||||| | |||| |||||| Sbjct 1094 TTGTTTTTCAATTAATTTTTCAAA 1117 >seq249537 Length=1253 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 67173 TAATTTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTC 67232 || ||| |||||| | ||||||||||||||| |||||| ||||||||||||| |||||| Sbjct 77 TATTTTAATGGCCCCTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTC 18 Query 67233 TATCCATCTGAGCTAAAG 67250 | ||| ||||||||||| Sbjct 17 TTACCA-CTGAGCTAAAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516862910523680