Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_028829.1
Length=248088
Score E
Sequences producing significant alignments: (Bits) Value
seq26767 140 5e-28
seq249645 111 2e-19
>seq26767
Length=1149
Score = 140 bits (154), Expect = 5e-28
Identities = 287/423 (68%), Gaps = 8/423 (2%)
Strand=Plus/Plus
Query 236266 TAGTCAAGATGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAGAACTAACAGT 236325
|| |||| ||||| | | |||||||||| || | || || || | |||||| |
Sbjct 58 TAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTATTTTTTAAAACTAATAAA 117
Query 236326 TTTTCAACTTCTAAGTGCCAAATCGGGTAAGTTAGAGTCGCAGCACCACCACGTACACCA 236385
|||||| ||| || ||||| || || ||| || ||| || || ||||| | || ||
Sbjct 118 CTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCCGCTCCACCTCTAACTCCT 177
Query 236386 CCTTGAGAACACGATTTAACCGCAGTTTGAAAGTGTTTCCAGAATGGAATTACACCAGTG 236445
||||||||||| ||||| || ||| ||||||| ||||| | || ||||| ||||||
Sbjct 178 CCTTGAGAACAGGATTTTACAGCACTTTGAAAATGTTTATAAAAAGGAATACAACCAGTA 237
Query 236446 TGACGAAT--CTCACCTGAACGA--ACGACTGCCCCTTCAGCACGAATCGCACCGCCATT 236501
||| ||| || || | | | |||| ||| | |||||||| || ||||
Sbjct 238 TGA--AATGCTTCGCCATTTCTAATAGGACT--ACCTACTGCACGAATTTTTCCAGCATT 293
Query 236502 CACACCGATACCTGCACGCTTACTAATGTAACTTACAATTGATTTAGCCACTTCATTGAT 236561
| ||| || ||||| || | | || || ||||||| || ||| | || ||
Sbjct 294 AATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACTAGTAGTAGCGTTAAT 353
Query 236562 TGAATGCAAAGAGTCGCCTGATTCAATCTTAACACACGAACTAAACTGGCGTGTCGGGGT 236621
|||| | | || | ||||||| |||||| || ||||| || || || || ||
Sbjct 354 AGAATCTAGATTATCATCACATTCAATTAAAACACATGAGCTAAATTGTCGAGTAGGAGT 413
Query 236622 ACGAACGCCTGCCATAATCGGTGTCGGTAATGAAAGTTTGTGAGTCGAAACTGCATTGTA 236681
| ||| || | |||||| ||||||||||| |||| |||| ||| |||| ||||| ||
Sbjct 414 TCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTTGAAAGTTGAAATGGCATTATA 473
Query 236682 GAA 236684
||
Sbjct 474 AAA 476
>seq249645
Length=476466
Score = 111 bits (122), Expect = 2e-19
Identities = 140/190 (74%), Gaps = 2/190 (1%)
Strand=Plus/Minus
Query 236259 TACACTGTAGTCAAGATGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAGAAC 236318
||| | |||||| | |||||| | |||||| ||||||||||| ||| || || || ||
Sbjct 264948 TACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGTAC 264889
Query 236319 TAACAGTTTTTCAACTTCTAAGTGCCAAATCGGGTAAGTTAGAGTCGCAGCACCACCACG 236378
| | | ||||||||||| ||||| | ||||| | ||||||||||| |||||
Sbjct 264888 CAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCACG 264829
Query 236379 TACACCACCTTGAGAACACGATTTAACCGCAGTTTGAAAGTGTTTCCAGAATGGAATTAC 236438
||| |||||||| || || ||||||| || ||||| || ||| | || |||| |||
Sbjct 264828 TACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAA-TAC 264770
Query 236439 A-CCAGTGTG 236447
| ||||| ||
Sbjct 264769 AGCCAGTATG 264760
Score = 105 bits (116), Expect = 1e-17
Identities = 214/307 (70%), Gaps = 12/307 (4%)
Strand=Plus/Minus
Query 234159 TGCCCATTCTTTCTCTTGCTCAACAACTTGCATGAAGATTTTTTCAGCTTCAGGTTG-AA 234217
|||||||||||| ||||||||| || ||| |||||||| | |||| | | ||
Sbjct 269048 TGCCCATTCTTTTTCTTGCTCAGCAGCTTTGCGGAAGATTTCAATACTTTCA--TCGAAA 268991
Query 234218 GACGACG-AGCAATCTCAAGCATTTCAGGGTCATCTTTACC--TGCATGCCAGATGTTGA 234274
|| | |||||||| | ||| ||||| || || ||| ||| || || ||| |
Sbjct 268990 CACTCTGCGGCAATCTCGACCATCTCAGGATCGTCACGACCGTTGC--GCATGAGGTTTA 268933
Query 234275 GTA-ATGCTTGTGTACCTTTCAAGTGAAGTTGTTCATCACGAGCAATGAGTTTCATCACT 234333
| | |||| || |||||| |||| || || |||||||||||| ||||| || || | |
Sbjct 268932 GCATATGC-TGCGTACCTGTCAAATGCAGCGCTTCATCACGAGCGATGAGCTTAATGATT 268874
Query 234334 TTCGCGTTGCCTTCCATGATACCTTGCTCTGCAAAGTTGAAAGTACATGCGAATGATACA 234393
|| || || |||||||| | |||| ||||| || | || || || || |||
Sbjct 268873 TTGGCATTACCTTCCATCAATTTGCGCTCAGCAAACGCAAACGAGCAAGCAAACGAGACA 268814
Query 234394 TAGAAACGAATTGCTTCAAGTGCGTTTACTGCGTGCATACACAGATATA-GTGCTTCTTT 234452
||||||||||| ||||| || |||| || || || |||||||| | ||||| |||
Sbjct 268813 TAGAAACGAATGGCTTCTAGGACGTTGACCGCCATGATGCACAGATACATCTGCTT-TTT 268755
Query 234453 TACTGCG 234459
| ||||
Sbjct 268754 CAGTGCG 268748
Score = 91.5 bits (100), Expect = 2e-13
Identities = 262/394 (66%), Gaps = 17/394 (4%)
Strand=Plus/Minus
Query 235181 ACGGG-TCGTAGTATTCATTCGCTGAAATACTCTGGTCTACAAACTTCTGCATGATTGCT 235239
||||| ||||||| ||| || || ||||| || || || || || |||||||| ||
Sbjct 266042 ACGGGATCGTAGTTAGTATTGGCAGAGATACTTTGATCGACGAATTTTTGCATGATAGCG 265983
Query 235240 ACAAGAGTCAAATAACCGAAGTTGTCTTTACCACATGCTTTCCATGCTAGACCGTATTCA 235299
|| || | | |||||| |||| | ||| || |||| ||| |||| | |
Sbjct 265982 ACCAGCTTTAGGTAACCGTCATTGTT----CGGCAT--TTGCCATAGTAGCTCGTACTGA 265929
Query 235300 TCTTTCAGTAAATCAACTTCAGGTACAACTTGGTTGAATACACCGTCTTTTGATTGCTTA 235359
||||| || |||| ||||| || ||||| || || | || ||||||||| ||||
Sbjct 265928 TCTTTTAGCTTGTCAATCTCAGGCACGACTTGCTTTAAGATGCCATCTTTTGAT-GCTTT 265870
Query 235360 G-TCGAGACTAGAGCACGCGGCGGTTCAATCCCGTTTGTGCTGTTGCTAATCTGA---GA 235415
| | ||||| ||| |||| || || || || ||||| || ||| |||||| ||
Sbjct 265869 GATAGAGACCAGACCACGTGGTGGCTCGATACCGTTGGTCGCATTGGCGATCTGACTTGA 265810
Query 235416 GCTACTTTCACAAGGCATGAAAGCTGAAGTGGTGTCATTTCGCATACCGTAACGAATTAC 235475
| | |||| | ||||| || || | ||| || |||| ||||| | | |
Sbjct 265809 GGT---TTCAGACGGCATCAAGGCGGTTAGGGTAGAGTTGCGCAGACCGTGCTCAGTGAT 265753
Query 235476 GTCAGCGCGAAGTGCTTCCCAATCTAAATTATAATTCGGCTTGACA-AGCTTATCAACAT 235534
|| | || || | ||||||||||||| | || | |||| || | |||||| | |
Sbjct 265752 CTCGCCACGTAGCGTTTCCCAATCTAAA-TGTAGTGGCTCTTGGCAGATCTTATCCAAGT 265694
Query 235535 TTTTATTGTACCAGTCAATCGGTAATTTACCTTG 235568
||| |||||| |||||||| || |||||||
Sbjct 265693 CTTTTTTGTACGTATCAATCGGCAAGATACCTTG 265660
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 791102185162240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |