Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_028829.1 Length=248088 Score E Sequences producing significant alignments: (Bits) Value seq26767 140 5e-28 seq249645 111 2e-19 >seq26767 Length=1149 Score = 140 bits (154), Expect = 5e-28 Identities = 287/423 (68%), Gaps = 8/423 (2%) Strand=Plus/Plus Query 236266 TAGTCAAGATGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAGAACTAACAGT 236325 || |||| ||||| | | |||||||||| || | || || || | |||||| | Sbjct 58 TAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTATTTTTTAAAACTAATAAA 117 Query 236326 TTTTCAACTTCTAAGTGCCAAATCGGGTAAGTTAGAGTCGCAGCACCACCACGTACACCA 236385 |||||| ||| || ||||| || || ||| || ||| || || ||||| | || || Sbjct 118 CTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCCGCTCCACCTCTAACTCCT 177 Query 236386 CCTTGAGAACACGATTTAACCGCAGTTTGAAAGTGTTTCCAGAATGGAATTACACCAGTG 236445 ||||||||||| ||||| || ||| ||||||| ||||| | || ||||| |||||| Sbjct 178 CCTTGAGAACAGGATTTTACAGCACTTTGAAAATGTTTATAAAAAGGAATACAACCAGTA 237 Query 236446 TGACGAAT--CTCACCTGAACGA--ACGACTGCCCCTTCAGCACGAATCGCACCGCCATT 236501 ||| ||| || || | | | |||| ||| | |||||||| || |||| Sbjct 238 TGA--AATGCTTCGCCATTTCTAATAGGACT--ACCTACTGCACGAATTTTTCCAGCATT 293 Query 236502 CACACCGATACCTGCACGCTTACTAATGTAACTTACAATTGATTTAGCCACTTCATTGAT 236561 | ||| || ||||| || | | || || ||||||| || ||| | || || Sbjct 294 AATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACTAGTAGTAGCGTTAAT 353 Query 236562 TGAATGCAAAGAGTCGCCTGATTCAATCTTAACACACGAACTAAACTGGCGTGTCGGGGT 236621 |||| | | || | ||||||| |||||| || ||||| || || || || || Sbjct 354 AGAATCTAGATTATCATCACATTCAATTAAAACACATGAGCTAAATTGTCGAGTAGGAGT 413 Query 236622 ACGAACGCCTGCCATAATCGGTGTCGGTAATGAAAGTTTGTGAGTCGAAACTGCATTGTA 236681 | ||| || | |||||| ||||||||||| |||| |||| ||| |||| ||||| || Sbjct 414 TCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTTGAAAGTTGAAATGGCATTATA 473 Query 236682 GAA 236684 || Sbjct 474 AAA 476 >seq249645 Length=476466 Score = 111 bits (122), Expect = 2e-19 Identities = 140/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 236259 TACACTGTAGTCAAGATGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAGAAC 236318 ||| | |||||| | |||||| | |||||| ||||||||||| ||| || || || || Sbjct 264948 TACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGTAC 264889 Query 236319 TAACAGTTTTTCAACTTCTAAGTGCCAAATCGGGTAAGTTAGAGTCGCAGCACCACCACG 236378 | | | ||||||||||| ||||| | ||||| | ||||||||||| ||||| Sbjct 264888 CAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCACG 264829 Query 236379 TACACCACCTTGAGAACACGATTTAACCGCAGTTTGAAAGTGTTTCCAGAATGGAATTAC 236438 ||| |||||||| || || ||||||| || ||||| || ||| | || |||| ||| Sbjct 264828 TACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAA-TAC 264770 Query 236439 A-CCAGTGTG 236447 | ||||| || Sbjct 264769 AGCCAGTATG 264760 Score = 105 bits (116), Expect = 1e-17 Identities = 214/307 (70%), Gaps = 12/307 (4%) Strand=Plus/Minus Query 234159 TGCCCATTCTTTCTCTTGCTCAACAACTTGCATGAAGATTTTTTCAGCTTCAGGTTG-AA 234217 |||||||||||| ||||||||| || ||| |||||||| | |||| | | || Sbjct 269048 TGCCCATTCTTTTTCTTGCTCAGCAGCTTTGCGGAAGATTTCAATACTTTCA--TCGAAA 268991 Query 234218 GACGACG-AGCAATCTCAAGCATTTCAGGGTCATCTTTACC--TGCATGCCAGATGTTGA 234274 || | |||||||| | ||| ||||| || || ||| ||| || || ||| | Sbjct 268990 CACTCTGCGGCAATCTCGACCATCTCAGGATCGTCACGACCGTTGC--GCATGAGGTTTA 268933 Query 234275 GTA-ATGCTTGTGTACCTTTCAAGTGAAGTTGTTCATCACGAGCAATGAGTTTCATCACT 234333 | | |||| || |||||| |||| || || |||||||||||| ||||| || || | | Sbjct 268932 GCATATGC-TGCGTACCTGTCAAATGCAGCGCTTCATCACGAGCGATGAGCTTAATGATT 268874 Query 234334 TTCGCGTTGCCTTCCATGATACCTTGCTCTGCAAAGTTGAAAGTACATGCGAATGATACA 234393 || || || |||||||| | |||| ||||| || | || || || || ||| Sbjct 268873 TTGGCATTACCTTCCATCAATTTGCGCTCAGCAAACGCAAACGAGCAAGCAAACGAGACA 268814 Query 234394 TAGAAACGAATTGCTTCAAGTGCGTTTACTGCGTGCATACACAGATATA-GTGCTTCTTT 234452 ||||||||||| ||||| || |||| || || || |||||||| | ||||| ||| Sbjct 268813 TAGAAACGAATGGCTTCTAGGACGTTGACCGCCATGATGCACAGATACATCTGCTT-TTT 268755 Query 234453 TACTGCG 234459 | |||| Sbjct 268754 CAGTGCG 268748 Score = 91.5 bits (100), Expect = 2e-13 Identities = 262/394 (66%), Gaps = 17/394 (4%) Strand=Plus/Minus Query 235181 ACGGG-TCGTAGTATTCATTCGCTGAAATACTCTGGTCTACAAACTTCTGCATGATTGCT 235239 ||||| ||||||| ||| || || ||||| || || || || || |||||||| || Sbjct 266042 ACGGGATCGTAGTTAGTATTGGCAGAGATACTTTGATCGACGAATTTTTGCATGATAGCG 265983 Query 235240 ACAAGAGTCAAATAACCGAAGTTGTCTTTACCACATGCTTTCCATGCTAGACCGTATTCA 235299 || || | | |||||| |||| | ||| || |||| ||| |||| | | Sbjct 265982 ACCAGCTTTAGGTAACCGTCATTGTT----CGGCAT--TTGCCATAGTAGCTCGTACTGA 265929 Query 235300 TCTTTCAGTAAATCAACTTCAGGTACAACTTGGTTGAATACACCGTCTTTTGATTGCTTA 235359 ||||| || |||| ||||| || ||||| || || | || ||||||||| |||| Sbjct 265928 TCTTTTAGCTTGTCAATCTCAGGCACGACTTGCTTTAAGATGCCATCTTTTGAT-GCTTT 265870 Query 235360 G-TCGAGACTAGAGCACGCGGCGGTTCAATCCCGTTTGTGCTGTTGCTAATCTGA---GA 235415 | | ||||| ||| |||| || || || || ||||| || ||| |||||| || Sbjct 265869 GATAGAGACCAGACCACGTGGTGGCTCGATACCGTTGGTCGCATTGGCGATCTGACTTGA 265810 Query 235416 GCTACTTTCACAAGGCATGAAAGCTGAAGTGGTGTCATTTCGCATACCGTAACGAATTAC 235475 | | |||| | ||||| || || | ||| || |||| ||||| | | | Sbjct 265809 GGT---TTCAGACGGCATCAAGGCGGTTAGGGTAGAGTTGCGCAGACCGTGCTCAGTGAT 265753 Query 235476 GTCAGCGCGAAGTGCTTCCCAATCTAAATTATAATTCGGCTTGACA-AGCTTATCAACAT 235534 || | || || | ||||||||||||| | || | |||| || | |||||| | | Sbjct 265752 CTCGCCACGTAGCGTTTCCCAATCTAAA-TGTAGTGGCTCTTGGCAGATCTTATCCAAGT 265694 Query 235535 TTTTATTGTACCAGTCAATCGGTAATTTACCTTG 235568 ||| |||||| |||||||| || ||||||| Sbjct 265693 CTTTTTTGTACGTATCAATCGGCAAGATACCTTG 265660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 791102185162240