Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_028837.1 Length=41149 Score E Sequences producing significant alignments: (Bits) Value seq204058 264 3e-66 seq158858 145 2e-30 seq189357 136 1e-27 >seq204058 Length=43643 Score = 264 bits (292), Expect = 3e-66 Identities = 616/918 (67%), Gaps = 22/918 (2%) Strand=Plus/Minus Query 20792 TGGATTGTCAACATAAAATTAGACAGCTTTTTTAAGGGATAATCTTCTGTAATTTATCGG 20851 ||||||||||||| ||| |||||| ||| |||||| | || |||| | | || Sbjct 19097 TGGATTGTCAACACTAAACTAGACAATTTTCTTAAGGAGTGATTGCTTGTAGTGAACGGG 19038 Query 20852 GCTCATATAGCCCAGGGTTCCATGAATGCGATGCCTGTTATACCAATTTATGTAATCATT 20911 ||| ||| |||| || || || |||||| | ||| ||||||||| |||||| | Sbjct 19037 GCTTTGATAATCCAGTGTACCGTGTATGCGAAGATGGTTGAACCAATTTACGTAATCCTG 18978 Query 20912 GAGCTCCAATATTAGATGCTGTAAACTTT-GAAAGTTCATCTAACTAATGAATTCGGTCT 20970 || ||| | | | | ||||| ||| || | | | | ||| || |||| Sbjct 18977 GAACTCGCGTTCCAACTCCATCAAACTCGAGAACACTCGTTTTT-TGACGAACTCTGTCT 18919 Query 20971 TCATAACTTTAAACGCAGCTTCAGCAACGGCGTTATCATAAGGACAACCTTTCATACTTA 21030 | |||| |||||| | ||||| ||||| || ||||| || ||||| || || || | Sbjct 18918 TGATAATTTTAAAAGTGGCTTCCGCAACTGCATTATCGTACGGACACCCCTTTTCGCTCA 18859 Query 21031 AAGATCGACCAATCTGGAACGTAGCAAGCGTCTCATCAATCAATTTATTTTTGAATTCAC 21090 | || |||| || ||||||| ||| | || |||||||| ||| || || || | Sbjct 18858 ACGAGCGACGGATACCGAACGTATGAAGGGCATCTTCAATCAAACGATTGTTAAACTCTC 18799 Query 21091 TGCCACGATCTGTATGAAACAATTGAATTTGTCGTAAGTCTCCTTGTACAGAGGAAAAGG 21150 |||||||| || ||||||| | || | ||||| || | | || | || | Sbjct 18798 GTCCACGATCCGTGTGAAACATCCGGATACGACGTAAATCATGAGGAATGGAAGCGAACG 18739 Query 21151 CACGCGCGACTAGAGCTGCGTCCTTTTTCGGGCCTGCGCTGGAGCCAATGATCTCTCGAT 21210 |||| ||| || || |||||| | ||| | || || ||||| ||||| | Sbjct 18738 CACGATGGACCAGTTGCGCATCCTTTCGCTCGCCCACACTATGCCCGATGATTTCTCGGT 18679 Query 21211 TGAAAAGATCAACAAATATACAGATGTAGTGCCATCTATTTTTA---ACTTTGACATACG 21267 | || ||||| ||||| | ||| | || |||||| |||| | || |||| || | Sbjct 18678 TAAAGAGATCGACAAAGACACATACATAATGCCAT---TTTTGACGGACCTTGATGTATG 18622 Query 21268 TTAGATCGCTTACAACAAC-----ACGCTTAGCTTCAGATTGCTCGAACTTACGGTTCAG 21322 | || || || || | ||| || ||| ||| ||||| |||| || |||| Sbjct 18621 TCAGGTCACTGACGATAACGGATAACTCTT---TTCC--TTGCTTGAACGCGCGATTCAA 18567 Query 21323 TTCATTTGGCTGTTGCGATTCGTTACATGCGGCTTTGTGTGGTTTGTATTGAGCCACCGT 21382 |||||| | | ||| ||||| || || |||| | |||||| |||| || | ||| Sbjct 18566 TTCATTAGCTTCCATCGACTCGTTGCACGCTTCTTTTTTAGGTTTGAATTGCGCAAGCGT 18507 Query 21383 GTACGTGGAAACAAGGCCCTGTTCCTTCATAATACGGCCAATTCGGCGTCTGGATACG-A 21441 |||||| || || || || ||||| ||||| ||||| || ||||| || | || ||| | Sbjct 18506 GTACGTAGAGACGAGACCTTGTTCTTTCATGATACGTCCGATTCGACGACGCGAGACGCA 18447 Query 21442 TGACACTACGTTCATGAAGTTTTGCTTTAATCTTTCTTGTACCGTA-TGCTTTCCGATTT 21500 | | || ||| || |||| || || || | || ||||| | || | | | Sbjct 18446 TTTCCCTT-GTTTTTGGAGTTCAATCTTGATTTTCCGCGTGCCGTAGTTCTCCCGGCTGC 18388 Query 21501 TTCTCAAAGATTTCAACGATATGATGGGTTACATGGTCTTCATTCTGACGCTCTTTGGCT 21560 || ||| |||||| ||| | || |||| ||| | | |||| | | ||| Sbjct 18387 ATCGGAAA-ATTTCACGGATGGCTTCCGTCACATCGTCGACCGATGGTCGCTGTCTCGCT 18329 Query 21561 TCATAATAGTACGTACTTCTAGAGATTTGTAGGACGTCGCACATTGCTGATACCGAGTAT 21620 |||||||| |||||||| | | | || |||||| |||||||||||||||||||||| Sbjct 18328 TCATAATAAAACGTACTTTTGGGTAACTGGAGGACGCTGCACATTGCTGATACCGAGTAT 18269 Query 21621 TTGTCACGATTACGCTTCATGACATTTACTTTCGTCCCATGATCAGCGCTGCTTGCTTTA 21680 || | |||||| ||| || ||| |||||||||||||||||||||||| |||||||||| Sbjct 18268 TTATGTCGATTATTCTTGATCACACTTACTTTCGTCCCATGATCAGCGCGGCTTGCTTTA 18209 Query 21681 AAATATCGACTTCCATCT 21698 ||||||| ||||||| Sbjct 18208 AAATATCATTCTCCATCT 18191 >seq158858 Length=235449 Score = 145 bits (160), Expect = 2e-30 Identities = 184/253 (73%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 14239 CAAGTAAATATGGAATTAAATGTCCGAATAAAATGGCACCGAAATATATTACGTTCCACA 14298 |||| ||||| ||| || ||||| || ||| | | | || ||||| | || | Sbjct 160013 CAAGCAAATACCCAATCAAGTGTCCTTATTCTATGAAAGCAGAGTACATTACAGTGCATA 160072 Query 14299 ATACGTATAACGATGCTCCCGCAGAAAATGAGGTTCGTTACATGATCGGGAACAATAACG 14358 | || ||||| ||||| || || | || ||||| |||||||||||| || | ||||| Sbjct 160073 ACACTTATAATGATGCGCCTGCTAAGAACGAGGTAAATTACATGATCGGAAATACTAACG 160132 Query 14359 AGGTTTCGTTCCACGTTGCTGTGGATGATAAGGAAGCTGTTCAGGGCATTCCTTTTGATC 14418 ||||||| |||||| | || || ||||||| |||| | |||| || ||||| |||||| Sbjct 160133 AGGTTTCATTCCACTTCGCAGTAGATGATATCGAAGTTATTCAAGGTATTCCGGTTGATC 160192 Query 14419 GAAATGCCTGGCATTGTGGAGACGGGAACGGGACAGGAAACCGTCAATCCATCGGCGTAG 14478 | ||||| ||||||||||| || || || | |||||||| |||| ||||| || | Sbjct 160193 GTAATGCTTGGCATTGTGGTGATGGTGGTGGTAACGGAAACCGAAAATCTATCGGTGTTG 160252 Query 14479 AGATTTGTTATTC 14491 | || ||||| || Sbjct 160253 AAATCTGTTACTC 160265 >seq189357 Length=12565 Score = 136 bits (150), Expect = 1e-27 Identities = 113/138 (82%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 21550 GCTCTTTGGCTTCATAATAGTACGTACTTCTAGAGATTTGTAGGACGTCGCACATTGCTG 21609 ||| ||| ||||| ||||| | ||| |||| | | ||| |||||| ||||||||||| Sbjct 7093 GCTGTTTAGCTTCGTAATAAAAGGTAATTCTGAATAATTGGAGGACGCTGCACATTGCTG 7034 Query 21610 ATACCGAGTATTTGTCACGATTACGCTTCATGACATTTACTTTCGTCCCATGATCAGCGC 21669 ||||||||||||| | |||||| ||| || ||| ||| |||||||| ||||||||||| Sbjct 7033 ATACCGAGTATTTATGTCGATTATTCTTGATCACACTTATTTTCGTCCGATGATCAGCGC 6974 Query 21670 TGCTTGCTTTAAAATATC 21687 ||||||||||||||||| Sbjct 6973 GGCTTGCTTTAAAATATC 6956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131137731608296