Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_028847.1 Length=170527 Score E Sequences producing significant alignments: (Bits) Value seq249645 118 1e-21 >seq249645 Length=476466 Score = 118 bits (130), Expect = 1e-21 Identities = 274/409 (67%), Gaps = 8/409 (2%) Strand=Plus/Minus Query 143920 GTTCATCTGGATTCCGTAGTCCATATGGCGAATACGGTTCTCATCGACACCTTTGTTGTT 143979 ||| | ||| | |||||||||||||| || | |||||| || || ||||| ||| || Sbjct 264957 GTTTAACTGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATT 264898 Query 143980 TTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 144039 ||| || || || | |||||||| |||||||| | || || | || ||||| Sbjct 264897 TTTGAGTACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGC 264838 Query 144040 GCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAA 144099 |||||||| | ||||||||||| || ||||||| || || ||||| ||| | || Sbjct 264837 ACCGCCACGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAA 264778 Query 144100 TGGAATAACACCGGTATGCTTGACTTCGCCCATGCCA---ATACGAGAACCTTCAGCACG 144156 |||||| || ||||||| |||| || |||| ||| | ||| ||||| Sbjct 264777 AGGAATACAGCCAGTATGCTGTGCTTCACC---GCCACGGATAGGGCTACCAAGGGCACG 264721 Query 144157 AATCATACCAACGTTGATACCAATACCGGCACGTTTAGAAATGTATTCAATTATTGAGTT 144216 || ||| ||||||| || ||||| ||||| | || | || | || | | | Sbjct 264720 GATACGACCTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCT 264661 Query 144217 AGCAGTTTTGTTAATAGA-TTTCAGTGAGTCGCCTGCTTCAATAACCACACAAGAACTAA 144275 || || ||| ||||| | | || | || || ||| || | || || || |||| Sbjct 264660 AGTGGTGGCGTTGATAGAGTCTAAGCTA-TCACCACATTCGATTAAGACGCACGAGCTAA 264602 Query 144276 ATTGACGGGTTGGTGTACGTGCTCCAGCCATAATAGGAGTTGGTAATGA 144324 | ||||| | ||| ||||| | || | ||| || || ||||||| ||| Sbjct 264601 ACTGACGCGATGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGA 264553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543736043998560