Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_028854.1
Length=43724
Score E
Sequences producing significant alignments: (Bits) Value
seq204058 264 3e-66
seq158858 145 2e-30
seq189357 136 1e-27
>seq204058
Length=43643
Score = 264 bits (292), Expect = 3e-66
Identities = 616/918 (67%), Gaps = 22/918 (2%)
Strand=Plus/Minus
Query 20786 TGGATTGTCAACATAAAATTAGACAGCTTTTTTAAGGGATAATCTTCTGTAATTTATCGG 20845
||||||||||||| ||| |||||| ||| |||||| | || |||| | | ||
Sbjct 19097 TGGATTGTCAACACTAAACTAGACAATTTTCTTAAGGAGTGATTGCTTGTAGTGAACGGG 19038
Query 20846 GCTCATATAGCCCAGGGTTCCATGAATGCGATGCCTGTTATACCAATTTATGTAATCATT 20905
||| ||| |||| || || || |||||| | ||| ||||||||| |||||| |
Sbjct 19037 GCTTTGATAATCCAGTGTACCGTGTATGCGAAGATGGTTGAACCAATTTACGTAATCCTG 18978
Query 20906 GAGCTCCAATATTAGATGCTGTAAACTTT-GAAAGTTCATCTAACTAATGAATTCGGTCT 20964
|| ||| | | | | ||||| ||| || | | | | ||| || ||||
Sbjct 18977 GAACTCGCGTTCCAACTCCATCAAACTCGAGAACACTCGTTTTT-TGACGAACTCTGTCT 18919
Query 20965 TCATAACTTTAAACGCAGCTTCAGCAACGGCGTTATCATAAGGACAACCTTTCATACTTA 21024
| |||| |||||| | ||||| ||||| || ||||| || ||||| || || || |
Sbjct 18918 TGATAATTTTAAAAGTGGCTTCCGCAACTGCATTATCGTACGGACACCCCTTTTCGCTCA 18859
Query 21025 AAGATCGACCAATCTGGAACGTAGCAAGCGTCTCATCAATCAATTTATTTTTGAATTCAC 21084
| || |||| || ||||||| ||| | || |||||||| ||| || || || |
Sbjct 18858 ACGAGCGACGGATACCGAACGTATGAAGGGCATCTTCAATCAAACGATTGTTAAACTCTC 18799
Query 21085 TGCCACGATCTGTATGAAACAATTGAATTTGTCGTAAGTCTCCTTGTACAGAGGAAAAGG 21144
|||||||| || ||||||| | || | ||||| || | | || | || |
Sbjct 18798 GTCCACGATCCGTGTGAAACATCCGGATACGACGTAAATCATGAGGAATGGAAGCGAACG 18739
Query 21145 CACGCGCGACTAGAGCTGCGTCCTTTTTCGGGCCTGCGCTGGAGCCAATGATCTCTCGAT 21204
|||| ||| || || |||||| | ||| | || || ||||| ||||| |
Sbjct 18738 CACGATGGACCAGTTGCGCATCCTTTCGCTCGCCCACACTATGCCCGATGATTTCTCGGT 18679
Query 21205 TGAAAAGATCAACAAATATACAGATGTAGTGCCATCTATTTTTA---ACTTTGACATACG 21261
| || ||||| ||||| | ||| | || |||||| |||| | || |||| || |
Sbjct 18678 TAAAGAGATCGACAAAGACACATACATAATGCCAT---TTTTGACGGACCTTGATGTATG 18622
Query 21262 TTAGATCGCTTACAACAAC-----ACGCTTAGCTTCAGATTGCTCGAACTTACGGTTCAG 21316
| || || || || | ||| || ||| ||| ||||| |||| || ||||
Sbjct 18621 TCAGGTCACTGACGATAACGGATAACTCTT---TTCC--TTGCTTGAACGCGCGATTCAA 18567
Query 21317 TTCATTTGGCTGTTGCGATTCGTTACATGCGGCTTTGTGTGGTTTGTATTGAGCCACCGT 21376
|||||| | | ||| ||||| || || |||| | |||||| |||| || | |||
Sbjct 18566 TTCATTAGCTTCCATCGACTCGTTGCACGCTTCTTTTTTAGGTTTGAATTGCGCAAGCGT 18507
Query 21377 GTACGTGGAAACAAGGCCCTGTTCCTTCATAATACGGCCAATTCGGCGTCTGGATACG-A 21435
|||||| || || || || ||||| ||||| ||||| || ||||| || | || ||| |
Sbjct 18506 GTACGTAGAGACGAGACCTTGTTCTTTCATGATACGTCCGATTCGACGACGCGAGACGCA 18447
Query 21436 TGACACTACGTTCATGAAGTTTTGCTTTAATCTTTCTTGTACCGTA-TGCTTTCCGATTT 21494
| | || ||| || |||| || || || | || ||||| | || | | |
Sbjct 18446 TTTCCCTT-GTTTTTGGAGTTCAATCTTGATTTTCCGCGTGCCGTAGTTCTCCCGGCTGC 18388
Query 21495 TTCTCAAAGATTTCAACGATATGATGGGTTACATGGTCTTCATTCTGACGCTCTTTGGCT 21554
|| ||| |||||| ||| | || |||| ||| | | |||| | | |||
Sbjct 18387 ATCGGAAA-ATTTCACGGATGGCTTCCGTCACATCGTCGACCGATGGTCGCTGTCTCGCT 18329
Query 21555 TCATAATAGTACGTACTTCTAGAGATTTGTAGGACGTCGCACATTGCTGATACCGAGTAT 21614
|||||||| |||||||| | | | || |||||| ||||||||||||||||||||||
Sbjct 18328 TCATAATAAAACGTACTTTTGGGTAACTGGAGGACGCTGCACATTGCTGATACCGAGTAT 18269
Query 21615 TTGTCACGATTACGCTTCATGACATTTACTTTCGTCCCATGATCAGCGCTGCTTGCTTTA 21674
|| | |||||| ||| || ||| |||||||||||||||||||||||| ||||||||||
Sbjct 18268 TTATGTCGATTATTCTTGATCACACTTACTTTCGTCCCATGATCAGCGCGGCTTGCTTTA 18209
Query 21675 AAATATCGACTTCCATCT 21692
||||||| |||||||
Sbjct 18208 AAATATCATTCTCCATCT 18191
>seq158858
Length=235449
Score = 145 bits (160), Expect = 2e-30
Identities = 184/253 (73%), Gaps = 0/253 (0%)
Strand=Plus/Plus
Query 14233 CAAGTAAATATGGAATTAAATGTCCGAATAAAATGGCACCGAAATATATTACGTTCCACA 14292
|||| ||||| ||| || ||||| || ||| | | | || ||||| | || |
Sbjct 160013 CAAGCAAATACCCAATCAAGTGTCCTTATTCTATGAAAGCAGAGTACATTACAGTGCATA 160072
Query 14293 ATACGTATAACGATGCTCCCGCAGAAAATGAGGTTCGTTACATGATCGGGAACAATAACG 14352
| || ||||| ||||| || || | || ||||| |||||||||||| || | |||||
Sbjct 160073 ACACTTATAATGATGCGCCTGCTAAGAACGAGGTAAATTACATGATCGGAAATACTAACG 160132
Query 14353 AGGTTTCGTTCCACGTTGCTGTGGATGATAAGGAAGCTGTTCAGGGCATTCCTTTTGATC 14412
||||||| |||||| | || || ||||||| |||| | |||| || ||||| ||||||
Sbjct 160133 AGGTTTCATTCCACTTCGCAGTAGATGATATCGAAGTTATTCAAGGTATTCCGGTTGATC 160192
Query 14413 GAAATGCCTGGCATTGTGGAGACGGGAACGGGACAGGAAACCGTCAATCCATCGGCGTAG 14472
| ||||| ||||||||||| || || || | |||||||| |||| ||||| || |
Sbjct 160193 GTAATGCTTGGCATTGTGGTGATGGTGGTGGTAACGGAAACCGAAAATCTATCGGTGTTG 160252
Query 14473 AGATTTGTTATTC 14485
| || ||||| ||
Sbjct 160253 AAATCTGTTACTC 160265
>seq189357
Length=12565
Score = 136 bits (150), Expect = 1e-27
Identities = 113/138 (82%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 21544 GCTCTTTGGCTTCATAATAGTACGTACTTCTAGAGATTTGTAGGACGTCGCACATTGCTG 21603
||| ||| ||||| ||||| | ||| |||| | | ||| |||||| |||||||||||
Sbjct 7093 GCTGTTTAGCTTCGTAATAAAAGGTAATTCTGAATAATTGGAGGACGCTGCACATTGCTG 7034
Query 21604 ATACCGAGTATTTGTCACGATTACGCTTCATGACATTTACTTTCGTCCCATGATCAGCGC 21663
||||||||||||| | |||||| ||| || ||| ||| |||||||| |||||||||||
Sbjct 7033 ATACCGAGTATTTATGTCGATTATTCTTGATCACACTTATTTTCGTCCGATGATCAGCGC 6974
Query 21664 TGCTTGCTTTAAAATATC 21681
|||||||||||||||||
Sbjct 6973 GGCTTGCTTTAAAATATC 6956
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 139351583348496
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |