Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_028854.1 Length=43724 Score E Sequences producing significant alignments: (Bits) Value seq204058 264 3e-66 seq158858 145 2e-30 seq189357 136 1e-27 >seq204058 Length=43643 Score = 264 bits (292), Expect = 3e-66 Identities = 616/918 (67%), Gaps = 22/918 (2%) Strand=Plus/Minus Query 20786 TGGATTGTCAACATAAAATTAGACAGCTTTTTTAAGGGATAATCTTCTGTAATTTATCGG 20845 ||||||||||||| ||| |||||| ||| |||||| | || |||| | | || Sbjct 19097 TGGATTGTCAACACTAAACTAGACAATTTTCTTAAGGAGTGATTGCTTGTAGTGAACGGG 19038 Query 20846 GCTCATATAGCCCAGGGTTCCATGAATGCGATGCCTGTTATACCAATTTATGTAATCATT 20905 ||| ||| |||| || || || |||||| | ||| ||||||||| |||||| | Sbjct 19037 GCTTTGATAATCCAGTGTACCGTGTATGCGAAGATGGTTGAACCAATTTACGTAATCCTG 18978 Query 20906 GAGCTCCAATATTAGATGCTGTAAACTTT-GAAAGTTCATCTAACTAATGAATTCGGTCT 20964 || ||| | | | | ||||| ||| || | | | | ||| || |||| Sbjct 18977 GAACTCGCGTTCCAACTCCATCAAACTCGAGAACACTCGTTTTT-TGACGAACTCTGTCT 18919 Query 20965 TCATAACTTTAAACGCAGCTTCAGCAACGGCGTTATCATAAGGACAACCTTTCATACTTA 21024 | |||| |||||| | ||||| ||||| || ||||| || ||||| || || || | Sbjct 18918 TGATAATTTTAAAAGTGGCTTCCGCAACTGCATTATCGTACGGACACCCCTTTTCGCTCA 18859 Query 21025 AAGATCGACCAATCTGGAACGTAGCAAGCGTCTCATCAATCAATTTATTTTTGAATTCAC 21084 | || |||| || ||||||| ||| | || |||||||| ||| || || || | Sbjct 18858 ACGAGCGACGGATACCGAACGTATGAAGGGCATCTTCAATCAAACGATTGTTAAACTCTC 18799 Query 21085 TGCCACGATCTGTATGAAACAATTGAATTTGTCGTAAGTCTCCTTGTACAGAGGAAAAGG 21144 |||||||| || ||||||| | || | ||||| || | | || | || | Sbjct 18798 GTCCACGATCCGTGTGAAACATCCGGATACGACGTAAATCATGAGGAATGGAAGCGAACG 18739 Query 21145 CACGCGCGACTAGAGCTGCGTCCTTTTTCGGGCCTGCGCTGGAGCCAATGATCTCTCGAT 21204 |||| ||| || || |||||| | ||| | || || ||||| ||||| | Sbjct 18738 CACGATGGACCAGTTGCGCATCCTTTCGCTCGCCCACACTATGCCCGATGATTTCTCGGT 18679 Query 21205 TGAAAAGATCAACAAATATACAGATGTAGTGCCATCTATTTTTA---ACTTTGACATACG 21261 | || ||||| ||||| | ||| | || |||||| |||| | || |||| || | Sbjct 18678 TAAAGAGATCGACAAAGACACATACATAATGCCAT---TTTTGACGGACCTTGATGTATG 18622 Query 21262 TTAGATCGCTTACAACAAC-----ACGCTTAGCTTCAGATTGCTCGAACTTACGGTTCAG 21316 | || || || || | ||| || ||| ||| ||||| |||| || |||| Sbjct 18621 TCAGGTCACTGACGATAACGGATAACTCTT---TTCC--TTGCTTGAACGCGCGATTCAA 18567 Query 21317 TTCATTTGGCTGTTGCGATTCGTTACATGCGGCTTTGTGTGGTTTGTATTGAGCCACCGT 21376 |||||| | | ||| ||||| || || |||| | |||||| |||| || | ||| Sbjct 18566 TTCATTAGCTTCCATCGACTCGTTGCACGCTTCTTTTTTAGGTTTGAATTGCGCAAGCGT 18507 Query 21377 GTACGTGGAAACAAGGCCCTGTTCCTTCATAATACGGCCAATTCGGCGTCTGGATACG-A 21435 |||||| || || || || ||||| ||||| ||||| || ||||| || | || ||| | Sbjct 18506 GTACGTAGAGACGAGACCTTGTTCTTTCATGATACGTCCGATTCGACGACGCGAGACGCA 18447 Query 21436 TGACACTACGTTCATGAAGTTTTGCTTTAATCTTTCTTGTACCGTA-TGCTTTCCGATTT 21494 | | || ||| || |||| || || || | || ||||| | || | | | Sbjct 18446 TTTCCCTT-GTTTTTGGAGTTCAATCTTGATTTTCCGCGTGCCGTAGTTCTCCCGGCTGC 18388 Query 21495 TTCTCAAAGATTTCAACGATATGATGGGTTACATGGTCTTCATTCTGACGCTCTTTGGCT 21554 || ||| |||||| ||| | || |||| ||| | | |||| | | ||| Sbjct 18387 ATCGGAAA-ATTTCACGGATGGCTTCCGTCACATCGTCGACCGATGGTCGCTGTCTCGCT 18329 Query 21555 TCATAATAGTACGTACTTCTAGAGATTTGTAGGACGTCGCACATTGCTGATACCGAGTAT 21614 |||||||| |||||||| | | | || |||||| |||||||||||||||||||||| Sbjct 18328 TCATAATAAAACGTACTTTTGGGTAACTGGAGGACGCTGCACATTGCTGATACCGAGTAT 18269 Query 21615 TTGTCACGATTACGCTTCATGACATTTACTTTCGTCCCATGATCAGCGCTGCTTGCTTTA 21674 || | |||||| ||| || ||| |||||||||||||||||||||||| |||||||||| Sbjct 18268 TTATGTCGATTATTCTTGATCACACTTACTTTCGTCCCATGATCAGCGCGGCTTGCTTTA 18209 Query 21675 AAATATCGACTTCCATCT 21692 ||||||| ||||||| Sbjct 18208 AAATATCATTCTCCATCT 18191 >seq158858 Length=235449 Score = 145 bits (160), Expect = 2e-30 Identities = 184/253 (73%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 14233 CAAGTAAATATGGAATTAAATGTCCGAATAAAATGGCACCGAAATATATTACGTTCCACA 14292 |||| ||||| ||| || ||||| || ||| | | | || ||||| | || | Sbjct 160013 CAAGCAAATACCCAATCAAGTGTCCTTATTCTATGAAAGCAGAGTACATTACAGTGCATA 160072 Query 14293 ATACGTATAACGATGCTCCCGCAGAAAATGAGGTTCGTTACATGATCGGGAACAATAACG 14352 | || ||||| ||||| || || | || ||||| |||||||||||| || | ||||| Sbjct 160073 ACACTTATAATGATGCGCCTGCTAAGAACGAGGTAAATTACATGATCGGAAATACTAACG 160132 Query 14353 AGGTTTCGTTCCACGTTGCTGTGGATGATAAGGAAGCTGTTCAGGGCATTCCTTTTGATC 14412 ||||||| |||||| | || || ||||||| |||| | |||| || ||||| |||||| Sbjct 160133 AGGTTTCATTCCACTTCGCAGTAGATGATATCGAAGTTATTCAAGGTATTCCGGTTGATC 160192 Query 14413 GAAATGCCTGGCATTGTGGAGACGGGAACGGGACAGGAAACCGTCAATCCATCGGCGTAG 14472 | ||||| ||||||||||| || || || | |||||||| |||| ||||| || | Sbjct 160193 GTAATGCTTGGCATTGTGGTGATGGTGGTGGTAACGGAAACCGAAAATCTATCGGTGTTG 160252 Query 14473 AGATTTGTTATTC 14485 | || ||||| || Sbjct 160253 AAATCTGTTACTC 160265 >seq189357 Length=12565 Score = 136 bits (150), Expect = 1e-27 Identities = 113/138 (82%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 21544 GCTCTTTGGCTTCATAATAGTACGTACTTCTAGAGATTTGTAGGACGTCGCACATTGCTG 21603 ||| ||| ||||| ||||| | ||| |||| | | ||| |||||| ||||||||||| Sbjct 7093 GCTGTTTAGCTTCGTAATAAAAGGTAATTCTGAATAATTGGAGGACGCTGCACATTGCTG 7034 Query 21604 ATACCGAGTATTTGTCACGATTACGCTTCATGACATTTACTTTCGTCCCATGATCAGCGC 21663 ||||||||||||| | |||||| ||| || ||| ||| |||||||| ||||||||||| Sbjct 7033 ATACCGAGTATTTATGTCGATTATTCTTGATCACACTTATTTTCGTCCGATGATCAGCGC 6974 Query 21664 TGCTTGCTTTAAAATATC 21681 ||||||||||||||||| Sbjct 6973 GGCTTGCTTTAAAATATC 6956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139351583348496