Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_028881.1 Length=170473 Score E Sequences producing significant alignments: (Bits) Value seq249645 131 2e-25 >seq249645 Length=476466 Score = 131 bits (144), Expect = 2e-25 Identities = 276/409 (67%), Gaps = 2/409 (0%) Strand=Plus/Minus Query 142858 GTTCAACTGGATTCCGTAGTCCATATGACGAATACGGTTCTCATCAACGCCTTTGTTGTT 142917 ||| ||||| | ||||||||||||||||| | |||||| || ||||| || ||| || Sbjct 264957 GTTTAACTGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATT 264898 Query 142918 TTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 142977 ||| || || || | |||||||| |||||||| | || || | || ||||| Sbjct 264897 TTTGAGTACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGC 264838 Query 142978 GCCGCCACGGATTCCACCTTGTGAACATGATTTAACTGCAGTCTGGAAATGCTTCCAGAA 143037 |||||||| | ||||||||||| || ||||||| || || ||||| || | || Sbjct 264837 ACCGCCACGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAA 264778 Query 143038 TGGAATAACACCGGTATGTTTGACTTCACCCATACCAATACGAGAACCTTCAGCACGAAT 143097 |||||| || ||||| | ||||||| || ||| | ||| ||||| || Sbjct 264777 AGGAATACAGCCAGTATGCTGTGCTTCACCGCCACGGATAGGGCTACCAAGGGCACGGAT 264718 Query 143098 CATACCAACGTTGATACCAATACCTGCACGTTTAGAAATATACTCGATTATTGAGTTAGC 143157 ||| ||||||| || ||||| ||||| | || | ||| | || | | ||| Sbjct 264717 ACGACCTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGT 264658 Query 143158 AGTTTTATTAATTGA-TTTCAGCGAGTCACCTGCTTCAATAACAACGCAAGAACTAAACT 143216 || || || || | | ||| | ||||| ||| || | ||||| || ||||||| Sbjct 264657 GGTGGCGTTGATAGAGTCTAAGCTA-TCACCACATTCGATTAAGACGCACGAGCTAAACT 264599 Query 143217 GACGGGTCGGGGTACGAGCACCAGCCATAATAGGAGTAGGCAATGAAAT 143265 |||| | || ||||| |||| | ||| || || || || | ||| || Sbjct 264598 GACGCGATGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGAT 264550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543563821211040