Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq249645 104 7e-18 >seq249645 Length=476466 Score = 104 bits (114), Expect = 7e-18 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 39082 AAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATG 39141 |||||||| || | |||||||| || || ||||||||||| | ||| ||||| || | Sbjct 145029 AAGTCGATATCAAAATCGGGCATTGATACGCGCTCAGGGTTTAAGAAGCGCTCAAACAAT 144970 Query 39142 AGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCA 39201 || | | | | || ||||| ||||| ||||| || || || ||| | ||||||||| Sbjct 144969 AGATCATAATGAATTGGGTCAAGGTCTGTGATGTTAAGCGCATAGGCGACAAGCGAGCCA 144910 Query 39202 GCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAG 39261 || ||||||| || || || || || ||||| || | || ||||||| || ||| Sbjct 144909 GCACCAGAGCCACGACCTGGCCCCACAGGTACGCCATTGGCTTTTGCCCAGCGAATAAAG 144850 Query 39262 TCGGCGACGACGAGGAAGTA 39281 || ||||| | |||||| Sbjct 144849 TCCATGACGATTAAGAAGTA 144830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159208370565096