Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_028911.1 Length=34176 Score E Sequences producing significant alignments: (Bits) Value seq238653 545 5e-151 seq235932 531 1e-146 seq205109 345 9e-91 seq35014 306 8e-79 seq165740 293 5e-75 seq260089 242 8e-60 seq205683 217 3e-52 seq232481 143 6e-30 seq262176 134 3e-27 seq185882 132 1e-26 seq53622 118 2e-22 seq133537 98.7 2e-16 >seq238653 Length=347 Score = 545 bits (604), Expect = 5e-151 Identities = 329/347 (95%), Gaps = 0/347 (0%) Strand=Plus/Plus Query 29908 ACCCTTAAAGAGTTCAATGAGTACATGCAGGAGGGACATTATCAATACTCGCTGCTCATC 29967 ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| Sbjct 1 ACCCTTAAAGAGTTCAATGAGTACATGCAGGAGGGGCATTATCAATACTCGCTGTTCATC 60 Query 29968 ATTCTGCAGCTTGATGAAGCCATGGAATATCTAAAAAAGGCGCAACAAGCCGATGCTGAT 30027 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 61 ATTCTGCAGCTTGATGAAGCCATGGAATATTTAAAAAAGGCGCAACAAGCCGATACTGAT 120 Query 30028 ATGAAGAAGTTTTGGTACCAGTGGGCGTACGTTACCTTGACAGATGCCTTAGAGACGGCT 30087 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ATGAAGAAGTTTTGGTACCAGTGGGCGTACGTTACCTTGACAGATGCCTTAGAGACGGCT 180 Query 30088 GAGTCAGAATATTATGGAGAAACTAGCGCATATCTACCAACAAAAGAAACTGATCCAGTA 30147 |||||||||||||||||||||||||| |||||| |||| ||||||||||| ||||| ||| Sbjct 181 GAGTCAGAATATTATGGAGAAACTAGTGCATATTTACCGACAAAAGAAACAGATCCGGTA 240 Query 30148 ACGCGAGCATACTGCCAAAACACATACGATATTTGGCAGGGATATCTGAAAAAGCTAAAT 30207 || ||||| |||||||||||||||||||| ||||||| ||||||||||| ||||||||| Sbjct 241 ACACGAGCCTACTGCCAAAACACATACGACATTTGGCGAGGATATCTGAAGAAGCTAAAT 300 Query 30208 GTGAACTTACCTAAACAAAAATTTTGAGGAGGCAAAAACATGATTGA 30254 ||||||||||| || |||||||||||||||||||||| ||||||||| Sbjct 301 GTGAACTTACCGAAGCAAAAATTTTGAGGAGGCAAAAGCATGATTGA 347 >seq235932 Length=369 Score = 531 bits (588), Expect = 1e-146 Identities = 339/369 (92%), Gaps = 0/369 (0%) Strand=Plus/Plus Query 32823 CAAGACGGCTTGGCATCGAATTCCAAAAGCCACTGAAGAATGAATATGATTCAGATGGCA 32882 ||||||||||||| |||| |||||||||||||||||||||||||| |||||||| || | Sbjct 1 CAAGACGGCTTGGTGTCGAGTTCCAAAAGCCACTGAAGAATGAATACGATTCAGACGGAA 60 Query 32883 CACAGTCCAGTGAAACCATTCTAAAGGTTGTCCGAGGCCATAAAATGACGCCTAGAGAGG 32942 |||| |||||||| || || ||||| |||||| | || || ||||||||||||||||||| Sbjct 61 CACAATCCAGTGAGACGATCCTAAAAGTTGTCAGGGGTCACAAAATGACGCCTAGAGAGG 120 Query 32943 TTCTGGAAGCTCACGGGTATGATTACACCAAGTGGGAGCTTTTACGTGCCACAAGCAATT 33002 || |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 121 TTTTGGAAGCTCACGGGTACGATTACACCAAGTGGGAGCTTGTACGTGCCACAAGCAATT 180 Query 33003 TCTGGAAGCAGACGCCTGAAGCGACATTGTATCAAAGTAAGATACAAATCAGGCCGTTAG 33062 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 181 TTTGGAAGCAGACGCCTGAAGCGACATTGTATCAAAGTAAGATACAAATCAGACCGCTAG 240 Query 33063 TTGAGGCGGAACAATATGAATCATTGATGAATGACATCATCACACACAAGGAACCGTATC 33122 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 241 TTGAGGCTGAACAATATGAATCATTGATGAATGACATCATCACACACAAGGAGCCGTATC 300 Query 33123 AAGCTAAGGCTCCTATTTTTGTGAAATCAGATCGCTATTTAGTCATTCCTGCTTTTGATA 33182 |||| | |||||||||||||||| |||||||||||||| | | |||||||||||| |||| Sbjct 301 AAGCAAGGGCTCCTATTTTTGTGGAATCAGATCGCTATCTGGCCATTCCTGCTTTCGATA 360 Query 33183 CACATTTCA 33191 ||||||||| Sbjct 361 CACATTTCA 369 >seq205109 Length=712 Score = 345 bits (382), Expect = 9e-91 Identities = 278/336 (83%), Gaps = 0/336 (0%) Strand=Plus/Plus Query 33521 AACATCACTTGGGACATATCACTTAAGCATTACAAAGGTGCAATGTTAGGCCGCAACTTC 33580 || || |||||||||||||| || |||||||||||||| ||||||||||||| ||||||| Sbjct 5 AATATTACTTGGGACATATCGCTGAAGCATTACAAAGGCGCAATGTTAGGCCACAACTTC 64 Query 33581 ATTGGTGCCACTCACGGAGACAAGGGCAAGAACAACTACCTTGCAAAATACCTAGACGAG 33640 ||||||||||||||||||||||||||||||||||| ||||| |||||||| || || ||| Sbjct 65 ATTGGTGCCACTCACGGAGACAAGGGCAAGAACAATTACCTCGCAAAATATCTCGATGAG 124 Query 33641 TTTGGATTCATGCTAGGAACAGCGCAGAACCGCGAGCTGTTCACGGGGCATCTCCATAGC 33700 ||||| |||||| |||| ||||| ||||| ||||| ||||| ||||| ||||| ||| Sbjct 125 TTTGGCTTCATGTTAGGCACAGCACAGAATCGCGAACTGTTTACGGGACATCTGCATTCA 184 Query 33701 GAGATGAGTAAAGACTTGGGAGGCTTCGTTCAGCGCCAAGTATCGACGAGAAAACCAACC 33760 |||||||| |||||| | || || ||||||||||| ||||||||||| | || |||| | Sbjct 185 GAGATGAGCAAAGACCTAGGCGGATTCGTTCAGCGTCAAGTATCGACACGCAAGCCAAAC 244 Query 33761 GACGTCTGGACTGACGCGCTTGGTGCTGTCTCCCACAAAACTTTTGAATTGGTCGAATAC 33820 ||| |||||||| | |||| | || | |||||||| ||||| |||||||||| Sbjct 245 GACAAGTGGACTGATGATATTGGCGTGGTTGCTCACAAAACGTTTGAGCTGGTCGAATAT 304 Query 33821 AGCGATCATGATACGAGGGCGATCTACTATGTCTAA 33856 ||||| ||||||||||||| |||||||| ||| Sbjct 305 TCGGATCACAATACGAGGGCGATTTACTATGTTTAA 340 >seq35014 Length=388 Score = 306 bits (338), Expect = 8e-79 Identities = 201/221 (91%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 32664 ACGACCCAATGGACATCTAATTTAAATTTTTAGGAGGCGAGTAGATGCAATGGACAGATG 32723 |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 33 ACGACCCAATGGACATCTGATTTAAATTTTC-GGAGGCGAGTAGATGCAATGGACAGATG 91 Query 32724 AACAAATCAGCGGAATTAGGAAGCTCGCCTCTGAAGGCTTTACCAGACGTGAGACGGCAG 32783 |||| ||||| | ||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 92 AACAGATCAGTGACATTAGGAAGCTCGCCTCTGAAGGCTTTACCAGACGCGAGGCGGCAG 151 Query 32784 ACAAGCTCGGTATTAGCTATGATGCGCTTCAAGGTAAAGCAAGACGGCTTGGCATCGAAT 32843 | |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 152 ATAAGCTCGGAATTAGCTATGACGCGCTTCAAGGTAAAGCAAGACGGCTTGGCATCGAGT 211 Query 32844 TCCAAAAGCCACTGAAGAATGAATATGATTCAGATGGCACA 32884 | ||||| ||||| || |||||||| ||||||| |||||| Sbjct 212 TTCAAAAACCACTAAAAAATGAATACGATTCAGGCGGCACA 252 >seq165740 Length=350 Score = 293 bits (324), Expect = 5e-75 Identities = 253/314 (81%), Gaps = 7/314 (2%) Strand=Plus/Minus Query 31465 GATGATTGCCGTCATGCTGATAATCTCAGGTGCTGCAATGTGGATGTGGGCTAACTGGAA 31524 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 311 GATGATTGCCGTCATGCTGCTAATCTCAGGTGCTGCAATGTGGATGTGGGCTAACTGGAA 252 Query 31525 AACTAAGTAGGAGGTAAATAATTTGGACAGCAAACGAGCGTTGGGCGAAAACCTTAGGAA 31584 || ||| || || | |||||| || |||||||| | | ||||| ||||| | Sbjct 251 AA-------GGAAGTGAACAGTTTGGATAGTAAACGAGCACTAGCAGAAAATCTTAGACA 199 Query 31585 GAATATATACGATTTGGGCATGACACAAGCCAAATATGCAAAAGAGATCGGAATACCCAT 31644 |||||| || ||| | || | ||||||||| |||||| ||||| || ||||||||| | Sbjct 198 GAATATTTATGATCTTGGTAAGACACAAGCTGCATATGCTAAAGACATTGGAATACCCCT 139 Query 31645 CACCACGCTTGAATATGTAATCTCTGGGAAGGGCAGTGTTTCACTCAACACTTTGGACAA 31704 | ||||| ||||||| ||||||| | |||||||||||| ||||||||| |||| || Sbjct 138 TAATACGCTCGAATATGCCGTCTCTGGCAGGGGCAGTGTTTCTCTCAACACTCTGGATAA 79 Query 31705 AATCGCATATGGAGCTGGGATTGATCCATGGGAACTAATTCGGCCTTCTGAAAGCAAATA 31764 ||||||| | ||||| || | || || ||||| || ||| ||||| ||||| |||||| Sbjct 78 AATCGCACAGGGAGCAGGTCTCGACCCGTGGGAGCTTATTAGGCCTCCTGAAGACAAATA 19 Query 31765 AAAAAGCGCACCAT 31778 |||||||||||||| Sbjct 18 AAAAAGCGCACCAT 5 >seq260089 Length=267 Score = 242 bits (268), Expect = 8e-60 Identities = 145/152 (95%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 32301 TTTCCGTCATATTATTGTATTGTGCCAAAGGTGAGAAACCTGAGACACCGCGTTTTTCCT 32360 |||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 25 TTTCCGCCATATGATTGTATTGTGCCAAAGGTGAGACACCTGAGACACCGCGTTTTTCCT 84 Query 32361 CCGAGCCACAGTGATGATAAAGCTGTGGCAAGGCGTGGCAATGAGGACTGACCGTGATAG 32420 |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 85 CCGAGCCATGGTGATGATAAAGCTGTGGCAAGGCGTGGCAATGAGGACTGACTGCGATAG 144 Query 32421 TCAGGCGGGTTCGATTCCCGCATGCCACATTG 32452 |||||||||||||||||||||||||||||||| Sbjct 145 TCAGGCGGGTTCGATTCCCGCATGCCACATTG 176 >seq205683 Length=379 Score = 217 bits (240), Expect = 3e-52 Identities = 260/351 (74%), Gaps = 9/351 (3%) Strand=Plus/Minus Query 27763 GGAGCAAGGTTTCTGTACGGTGAAATTACGGCGCTCAGCAATAAGAAGGGTTACTGCTGG 27822 ||||||| | |||||||| | || || ||||| ||||||| ||||| || | || ||| Sbjct 375 GGAGCAAAGCTTCTGTACAGCGAGATCACGGCACTCAGCAGTAAGAGCGGCTCTTGTTGG 316 Query 27823 GCGGGTGATCAATACTTTGCGACTTTGTACAAGGTAACTAAAACTACTGTACAAAGGTGG 27882 ||| | ||||| |||||| |||||||||| ||||| | |||| ||| ||||||| ||| Sbjct 315 GCGAGCGATCAGTACTTTATGACTTTGTACGAGGTAGGTCAAACCACTATACAAAGATGG 256 Query 27883 CTAAAGTCTCTTGAGGACAACGGATATATTAAGCGTAGCGTCAAATACAAAGACGGTACC 27942 ||| || | || |||| |||||||||| | ||| ||||||||||||||||||||| Sbjct 255 CTACGTGCTTTAGAAGACAGCGGATATATTGAACGTCATGTCAAATACAAAGACGGTACC 196 Query 27943 AAAGAAATCGAAAGAAGATACATCAAAATTAGCAAAGATGATGTGCCCGAGAATTGCAAT 28002 ||||||||||||| ||| || ||||||||| | | ||| | ||||| | ||| | ||| Sbjct 195 AAAGAAATCGAAAAAAGGTATATCAAAATTCGTACAGACCCTATGCCCAAAAATGGTAAT 136 Query 28003 GTGTATACCTACTTACAACAATGTAATACCCCTACACACGTGAATGTAAGAGATAATACT 28062 |||| | | || | | ||| ||||| | | || | ||| |||| | Sbjct 135 ACCTATAGCCA-----AAAACGGGTATA-CCCTATGCCCAAAAACGGGCAAGAGAATAAT 82 Query 28063 ACAAGTATTAATACTATAAACACACGTGCATTAAGCACGTTAGATAGTGAC 28113 ||||||| ||| || ||||| |||||||| ||||||||||| |||||| Sbjct 81 ACAAGTACTAA---TAAAAACATACGTGCATCCAGCACGTTAGAGAGTGAC 34 Score = 104 bits (114), Expect = 5e-18 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 27537 CCACAATTCAAAACTGGCTACGTGTACTGGAAGAATGCAAATATATTAATCGTCATGTCA 27596 |||| || |||| |||||||||| | ||||| || ||||||| | |||||||||| Sbjct 272 CCACTATACAAAGATGGCTACGTGCTTTAGAAGACAGCGGATATATTGAACGTCATGTCA 213 Query 27597 AATACAAAGACGGCACCAAAGAAGTTGAGGGAAGGTATATCGAGATTATTACAGAAACTA 27656 ||||||||||||| ||||||||| | || |||||||||| | ||| |||||| ||| Sbjct 212 AATACAAAGACGGTACCAAAGAAATCGAAAAAAGGTATATCAAAATTCGTACAGACCCTA 153 Query 27657 TG 27658 || Sbjct 152 TG 151 >seq232481 Length=1166 Score = 143 bits (158), Expect = 6e-30 Identities = 213/298 (71%), Gaps = 8/298 (3%) Strand=Plus/Plus Query 25585 TTGTTATATTCACGCATGACTTCAATGCGTTTATCATTTAACGCTTTAGACAACTTGTTG 25644 ||||| |||||||| | | |||||||||||| ||||| | |||||| | || |||| Sbjct 1 TTGTTGTATTCACGTTTAATTTCAATGCGTTTGTCATTGAGCGCTTTTGCCAGCTTGCGC 60 Query 25645 AGATCTGCGCGGGAAGCTTTTGCCTGTGGTAACGTCTCCGGTGTAATGACAAGACCCCGG 25704 | ||| | || || |||||||||| | || || || || ||||| || || || Sbjct 61 AAATCAGAACGTGATGCTTTTGCCTCTTTCAAGGTTCCCTCAGTGATGACGAGTCCACGA 120 Query 25705 TACTTGTTCGTGTACTGCTTGATGTTTGCAGCTAGTTCATCAGCGTGTTGTAGGACAAGC 25764 || || | | || ||||||| || || || || ||||| || |||||||| ||| Sbjct 121 TATTTTTCGGCATATAGCTTGATATTGGCCGCAAGCTCATCTGCATGTTGTAGAGTCAGC 180 Query 25765 ACAGATGGCTTATAATCAACTCGAAAGTTATTAAGTGA-AGCGGGTAATTCTCCATTCGT 25823 || |||||||||||||||||| | |||| | ||||||| | | || ||| | ||| | Sbjct 181 ACCGATGGCTTATAATCAACTTGGAAGTCAGTAAGTGACAATGTGTTATTTTGCAT---T 237 Query 25824 TTTCATTGCTTGCTTCCTTTCTCGCCGTTGGTCTGCACGCCAGCGGCTTTTTTCATGA 25881 | || || ||| || || | |||||| ||| |||||||||||||||||||| Sbjct 238 ATGAAT---TTCCTTTCTATC-AGTCGTTGGCGTGCGGGCCAGCGGCTTTTTTCATGA 291 >seq262176 Length=464 Score = 134 bits (148), Expect = 3e-27 Identities = 86/94 (91%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 32436 TCCCGCATGCCACATTGTCCAGTTTAGCGACCGGACACAGTTTGCGATGACCCCATCTGA 32495 |||| | ||| |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 20 TCCCACCGGCCTCATTGTCCAGTTTAGCGACCGGACACAGCTTGCGATGACCCCATCTGA 79 Query 32496 CACTGGGAGAGCGAGCAGCAACTGAAGCTTCGGC 32529 ||||||||||||||||||||||||| | || ||| Sbjct 80 CACTGGGAGAGCGAGCAGCAACTGACGTTTAGGC 113 >seq185882 Length=525 Score = 132 bits (146), Expect = 1e-26 Identities = 81/86 (94%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 31385 TGTTTTTCTGATATTAGCAGCAATCTTGTTTGCGCTTTGGGACATTGCGGATTCAATCAG 31444 ||||||||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 241 TGTTTTTCTGACATTGGCAGCAATATTGTTTGCGCTTTGGGACATTTCGGATTCAATCAG 182 Query 31445 GGAGGAGCGGCAATGAAACAGATGAT 31470 ||||||||||||||||||||||| || Sbjct 181 GGAGGAGCGGCAATGAAACAGATAAT 156 >seq53622 Length=425 Score = 118 bits (130), Expect = 2e-22 Identities = 73/77 (95%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 17710 GATCAATACAAGCAAATTACAGGTAGTGACTATGTCGCCAGCAAAAGCTAGCGGCTATTT 17769 || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 226 GACCAATACAAACAAATTACAGGCAGTGACTATGTCGCCAGCAAAAGCTAGCGGCTATTT 167 Query 17770 TTGTGGAA-GGAAGTGA 17785 |||||||| |||||||| Sbjct 166 TTGTGGAATGGAAGTGA 150 >seq133537 Length=297 Score = 98.7 bits (108), Expect = 2e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 33861 ATGAAGCGAGTCGGATACGGCTACGTATGCAATACAGAGCAAGCAATCATTGAGAAACTA 33920 ||||||||||| | |||||| || || ||| ||| || || |||| ||||| || || Sbjct 189 ATGAAGCGAGTTGAATACGGATATGTGAGCAGTACTGAACAGACAATAATTGAAGAATTA 248 Query 33921 TCGAGAGAAGAAAAACACATGCAAGCATTTATCTACACGAAGCC 33964 ||||||||||| ||||||||||| || | |||||||||||||| Sbjct 249 TCGAGAGAAGAGAAACACATGCAGGCGATCATCTACACGAAGCC 292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108894940080368