Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_028911.1
Length=34176
Score E
Sequences producing significant alignments: (Bits) Value
seq238653 545 5e-151
seq235932 531 1e-146
seq205109 345 9e-91
seq35014 306 8e-79
seq165740 293 5e-75
seq260089 242 8e-60
seq205683 217 3e-52
seq232481 143 6e-30
seq262176 134 3e-27
seq185882 132 1e-26
seq53622 118 2e-22
seq133537 98.7 2e-16
>seq238653
Length=347
Score = 545 bits (604), Expect = 5e-151
Identities = 329/347 (95%), Gaps = 0/347 (0%)
Strand=Plus/Plus
Query 29908 ACCCTTAAAGAGTTCAATGAGTACATGCAGGAGGGACATTATCAATACTCGCTGCTCATC 29967
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1 ACCCTTAAAGAGTTCAATGAGTACATGCAGGAGGGGCATTATCAATACTCGCTGTTCATC 60
Query 29968 ATTCTGCAGCTTGATGAAGCCATGGAATATCTAAAAAAGGCGCAACAAGCCGATGCTGAT 30027
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 61 ATTCTGCAGCTTGATGAAGCCATGGAATATTTAAAAAAGGCGCAACAAGCCGATACTGAT 120
Query 30028 ATGAAGAAGTTTTGGTACCAGTGGGCGTACGTTACCTTGACAGATGCCTTAGAGACGGCT 30087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGAAGAAGTTTTGGTACCAGTGGGCGTACGTTACCTTGACAGATGCCTTAGAGACGGCT 180
Query 30088 GAGTCAGAATATTATGGAGAAACTAGCGCATATCTACCAACAAAAGAAACTGATCCAGTA 30147
|||||||||||||||||||||||||| |||||| |||| ||||||||||| ||||| |||
Sbjct 181 GAGTCAGAATATTATGGAGAAACTAGTGCATATTTACCGACAAAAGAAACAGATCCGGTA 240
Query 30148 ACGCGAGCATACTGCCAAAACACATACGATATTTGGCAGGGATATCTGAAAAAGCTAAAT 30207
|| ||||| |||||||||||||||||||| ||||||| ||||||||||| |||||||||
Sbjct 241 ACACGAGCCTACTGCCAAAACACATACGACATTTGGCGAGGATATCTGAAGAAGCTAAAT 300
Query 30208 GTGAACTTACCTAAACAAAAATTTTGAGGAGGCAAAAACATGATTGA 30254
||||||||||| || |||||||||||||||||||||| |||||||||
Sbjct 301 GTGAACTTACCGAAGCAAAAATTTTGAGGAGGCAAAAGCATGATTGA 347
>seq235932
Length=369
Score = 531 bits (588), Expect = 1e-146
Identities = 339/369 (92%), Gaps = 0/369 (0%)
Strand=Plus/Plus
Query 32823 CAAGACGGCTTGGCATCGAATTCCAAAAGCCACTGAAGAATGAATATGATTCAGATGGCA 32882
||||||||||||| |||| |||||||||||||||||||||||||| |||||||| || |
Sbjct 1 CAAGACGGCTTGGTGTCGAGTTCCAAAAGCCACTGAAGAATGAATACGATTCAGACGGAA 60
Query 32883 CACAGTCCAGTGAAACCATTCTAAAGGTTGTCCGAGGCCATAAAATGACGCCTAGAGAGG 32942
|||| |||||||| || || ||||| |||||| | || || |||||||||||||||||||
Sbjct 61 CACAATCCAGTGAGACGATCCTAAAAGTTGTCAGGGGTCACAAAATGACGCCTAGAGAGG 120
Query 32943 TTCTGGAAGCTCACGGGTATGATTACACCAAGTGGGAGCTTTTACGTGCCACAAGCAATT 33002
|| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 TTTTGGAAGCTCACGGGTACGATTACACCAAGTGGGAGCTTGTACGTGCCACAAGCAATT 180
Query 33003 TCTGGAAGCAGACGCCTGAAGCGACATTGTATCAAAGTAAGATACAAATCAGGCCGTTAG 33062
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 181 TTTGGAAGCAGACGCCTGAAGCGACATTGTATCAAAGTAAGATACAAATCAGACCGCTAG 240
Query 33063 TTGAGGCGGAACAATATGAATCATTGATGAATGACATCATCACACACAAGGAACCGTATC 33122
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 TTGAGGCTGAACAATATGAATCATTGATGAATGACATCATCACACACAAGGAGCCGTATC 300
Query 33123 AAGCTAAGGCTCCTATTTTTGTGAAATCAGATCGCTATTTAGTCATTCCTGCTTTTGATA 33182
|||| | |||||||||||||||| |||||||||||||| | | |||||||||||| ||||
Sbjct 301 AAGCAAGGGCTCCTATTTTTGTGGAATCAGATCGCTATCTGGCCATTCCTGCTTTCGATA 360
Query 33183 CACATTTCA 33191
|||||||||
Sbjct 361 CACATTTCA 369
>seq205109
Length=712
Score = 345 bits (382), Expect = 9e-91
Identities = 278/336 (83%), Gaps = 0/336 (0%)
Strand=Plus/Plus
Query 33521 AACATCACTTGGGACATATCACTTAAGCATTACAAAGGTGCAATGTTAGGCCGCAACTTC 33580
|| || |||||||||||||| || |||||||||||||| ||||||||||||| |||||||
Sbjct 5 AATATTACTTGGGACATATCGCTGAAGCATTACAAAGGCGCAATGTTAGGCCACAACTTC 64
Query 33581 ATTGGTGCCACTCACGGAGACAAGGGCAAGAACAACTACCTTGCAAAATACCTAGACGAG 33640
||||||||||||||||||||||||||||||||||| ||||| |||||||| || || |||
Sbjct 65 ATTGGTGCCACTCACGGAGACAAGGGCAAGAACAATTACCTCGCAAAATATCTCGATGAG 124
Query 33641 TTTGGATTCATGCTAGGAACAGCGCAGAACCGCGAGCTGTTCACGGGGCATCTCCATAGC 33700
||||| |||||| |||| ||||| ||||| ||||| ||||| ||||| ||||| |||
Sbjct 125 TTTGGCTTCATGTTAGGCACAGCACAGAATCGCGAACTGTTTACGGGACATCTGCATTCA 184
Query 33701 GAGATGAGTAAAGACTTGGGAGGCTTCGTTCAGCGCCAAGTATCGACGAGAAAACCAACC 33760
|||||||| |||||| | || || ||||||||||| ||||||||||| | || |||| |
Sbjct 185 GAGATGAGCAAAGACCTAGGCGGATTCGTTCAGCGTCAAGTATCGACACGCAAGCCAAAC 244
Query 33761 GACGTCTGGACTGACGCGCTTGGTGCTGTCTCCCACAAAACTTTTGAATTGGTCGAATAC 33820
||| |||||||| | |||| | || | |||||||| ||||| ||||||||||
Sbjct 245 GACAAGTGGACTGATGATATTGGCGTGGTTGCTCACAAAACGTTTGAGCTGGTCGAATAT 304
Query 33821 AGCGATCATGATACGAGGGCGATCTACTATGTCTAA 33856
||||| ||||||||||||| |||||||| |||
Sbjct 305 TCGGATCACAATACGAGGGCGATTTACTATGTTTAA 340
>seq35014
Length=388
Score = 306 bits (338), Expect = 8e-79
Identities = 201/221 (91%), Gaps = 1/221 (0%)
Strand=Plus/Plus
Query 32664 ACGACCCAATGGACATCTAATTTAAATTTTTAGGAGGCGAGTAGATGCAATGGACAGATG 32723
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 33 ACGACCCAATGGACATCTGATTTAAATTTTC-GGAGGCGAGTAGATGCAATGGACAGATG 91
Query 32724 AACAAATCAGCGGAATTAGGAAGCTCGCCTCTGAAGGCTTTACCAGACGTGAGACGGCAG 32783
|||| ||||| | ||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 92 AACAGATCAGTGACATTAGGAAGCTCGCCTCTGAAGGCTTTACCAGACGCGAGGCGGCAG 151
Query 32784 ACAAGCTCGGTATTAGCTATGATGCGCTTCAAGGTAAAGCAAGACGGCTTGGCATCGAAT 32843
| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 152 ATAAGCTCGGAATTAGCTATGACGCGCTTCAAGGTAAAGCAAGACGGCTTGGCATCGAGT 211
Query 32844 TCCAAAAGCCACTGAAGAATGAATATGATTCAGATGGCACA 32884
| ||||| ||||| || |||||||| ||||||| ||||||
Sbjct 212 TTCAAAAACCACTAAAAAATGAATACGATTCAGGCGGCACA 252
>seq165740
Length=350
Score = 293 bits (324), Expect = 5e-75
Identities = 253/314 (81%), Gaps = 7/314 (2%)
Strand=Plus/Minus
Query 31465 GATGATTGCCGTCATGCTGATAATCTCAGGTGCTGCAATGTGGATGTGGGCTAACTGGAA 31524
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 311 GATGATTGCCGTCATGCTGCTAATCTCAGGTGCTGCAATGTGGATGTGGGCTAACTGGAA 252
Query 31525 AACTAAGTAGGAGGTAAATAATTTGGACAGCAAACGAGCGTTGGGCGAAAACCTTAGGAA 31584
|| ||| || || | |||||| || |||||||| | | ||||| ||||| |
Sbjct 251 AA-------GGAAGTGAACAGTTTGGATAGTAAACGAGCACTAGCAGAAAATCTTAGACA 199
Query 31585 GAATATATACGATTTGGGCATGACACAAGCCAAATATGCAAAAGAGATCGGAATACCCAT 31644
|||||| || ||| | || | ||||||||| |||||| ||||| || ||||||||| |
Sbjct 198 GAATATTTATGATCTTGGTAAGACACAAGCTGCATATGCTAAAGACATTGGAATACCCCT 139
Query 31645 CACCACGCTTGAATATGTAATCTCTGGGAAGGGCAGTGTTTCACTCAACACTTTGGACAA 31704
| ||||| ||||||| ||||||| | |||||||||||| ||||||||| |||| ||
Sbjct 138 TAATACGCTCGAATATGCCGTCTCTGGCAGGGGCAGTGTTTCTCTCAACACTCTGGATAA 79
Query 31705 AATCGCATATGGAGCTGGGATTGATCCATGGGAACTAATTCGGCCTTCTGAAAGCAAATA 31764
||||||| | ||||| || | || || ||||| || ||| ||||| ||||| ||||||
Sbjct 78 AATCGCACAGGGAGCAGGTCTCGACCCGTGGGAGCTTATTAGGCCTCCTGAAGACAAATA 19
Query 31765 AAAAAGCGCACCAT 31778
||||||||||||||
Sbjct 18 AAAAAGCGCACCAT 5
>seq260089
Length=267
Score = 242 bits (268), Expect = 8e-60
Identities = 145/152 (95%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 32301 TTTCCGTCATATTATTGTATTGTGCCAAAGGTGAGAAACCTGAGACACCGCGTTTTTCCT 32360
|||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 25 TTTCCGCCATATGATTGTATTGTGCCAAAGGTGAGACACCTGAGACACCGCGTTTTTCCT 84
Query 32361 CCGAGCCACAGTGATGATAAAGCTGTGGCAAGGCGTGGCAATGAGGACTGACCGTGATAG 32420
|||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 85 CCGAGCCATGGTGATGATAAAGCTGTGGCAAGGCGTGGCAATGAGGACTGACTGCGATAG 144
Query 32421 TCAGGCGGGTTCGATTCCCGCATGCCACATTG 32452
||||||||||||||||||||||||||||||||
Sbjct 145 TCAGGCGGGTTCGATTCCCGCATGCCACATTG 176
>seq205683
Length=379
Score = 217 bits (240), Expect = 3e-52
Identities = 260/351 (74%), Gaps = 9/351 (3%)
Strand=Plus/Minus
Query 27763 GGAGCAAGGTTTCTGTACGGTGAAATTACGGCGCTCAGCAATAAGAAGGGTTACTGCTGG 27822
||||||| | |||||||| | || || ||||| ||||||| ||||| || | || |||
Sbjct 375 GGAGCAAAGCTTCTGTACAGCGAGATCACGGCACTCAGCAGTAAGAGCGGCTCTTGTTGG 316
Query 27823 GCGGGTGATCAATACTTTGCGACTTTGTACAAGGTAACTAAAACTACTGTACAAAGGTGG 27882
||| | ||||| |||||| |||||||||| ||||| | |||| ||| ||||||| |||
Sbjct 315 GCGAGCGATCAGTACTTTATGACTTTGTACGAGGTAGGTCAAACCACTATACAAAGATGG 256
Query 27883 CTAAAGTCTCTTGAGGACAACGGATATATTAAGCGTAGCGTCAAATACAAAGACGGTACC 27942
||| || | || |||| |||||||||| | ||| |||||||||||||||||||||
Sbjct 255 CTACGTGCTTTAGAAGACAGCGGATATATTGAACGTCATGTCAAATACAAAGACGGTACC 196
Query 27943 AAAGAAATCGAAAGAAGATACATCAAAATTAGCAAAGATGATGTGCCCGAGAATTGCAAT 28002
||||||||||||| ||| || ||||||||| | | ||| | ||||| | ||| | |||
Sbjct 195 AAAGAAATCGAAAAAAGGTATATCAAAATTCGTACAGACCCTATGCCCAAAAATGGTAAT 136
Query 28003 GTGTATACCTACTTACAACAATGTAATACCCCTACACACGTGAATGTAAGAGATAATACT 28062
|||| | | || | | ||| ||||| | | || | ||| |||| |
Sbjct 135 ACCTATAGCCA-----AAAACGGGTATA-CCCTATGCCCAAAAACGGGCAAGAGAATAAT 82
Query 28063 ACAAGTATTAATACTATAAACACACGTGCATTAAGCACGTTAGATAGTGAC 28113
||||||| ||| || ||||| |||||||| ||||||||||| ||||||
Sbjct 81 ACAAGTACTAA---TAAAAACATACGTGCATCCAGCACGTTAGAGAGTGAC 34
Score = 104 bits (114), Expect = 5e-18
Identities = 96/122 (79%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 27537 CCACAATTCAAAACTGGCTACGTGTACTGGAAGAATGCAAATATATTAATCGTCATGTCA 27596
|||| || |||| |||||||||| | ||||| || ||||||| | ||||||||||
Sbjct 272 CCACTATACAAAGATGGCTACGTGCTTTAGAAGACAGCGGATATATTGAACGTCATGTCA 213
Query 27597 AATACAAAGACGGCACCAAAGAAGTTGAGGGAAGGTATATCGAGATTATTACAGAAACTA 27656
||||||||||||| ||||||||| | || |||||||||| | ||| |||||| |||
Sbjct 212 AATACAAAGACGGTACCAAAGAAATCGAAAAAAGGTATATCAAAATTCGTACAGACCCTA 153
Query 27657 TG 27658
||
Sbjct 152 TG 151
>seq232481
Length=1166
Score = 143 bits (158), Expect = 6e-30
Identities = 213/298 (71%), Gaps = 8/298 (3%)
Strand=Plus/Plus
Query 25585 TTGTTATATTCACGCATGACTTCAATGCGTTTATCATTTAACGCTTTAGACAACTTGTTG 25644
||||| |||||||| | | |||||||||||| ||||| | |||||| | || ||||
Sbjct 1 TTGTTGTATTCACGTTTAATTTCAATGCGTTTGTCATTGAGCGCTTTTGCCAGCTTGCGC 60
Query 25645 AGATCTGCGCGGGAAGCTTTTGCCTGTGGTAACGTCTCCGGTGTAATGACAAGACCCCGG 25704
| ||| | || || |||||||||| | || || || || ||||| || || ||
Sbjct 61 AAATCAGAACGTGATGCTTTTGCCTCTTTCAAGGTTCCCTCAGTGATGACGAGTCCACGA 120
Query 25705 TACTTGTTCGTGTACTGCTTGATGTTTGCAGCTAGTTCATCAGCGTGTTGTAGGACAAGC 25764
|| || | | || ||||||| || || || || ||||| || |||||||| |||
Sbjct 121 TATTTTTCGGCATATAGCTTGATATTGGCCGCAAGCTCATCTGCATGTTGTAGAGTCAGC 180
Query 25765 ACAGATGGCTTATAATCAACTCGAAAGTTATTAAGTGA-AGCGGGTAATTCTCCATTCGT 25823
|| |||||||||||||||||| | |||| | ||||||| | | || ||| | ||| |
Sbjct 181 ACCGATGGCTTATAATCAACTTGGAAGTCAGTAAGTGACAATGTGTTATTTTGCAT---T 237
Query 25824 TTTCATTGCTTGCTTCCTTTCTCGCCGTTGGTCTGCACGCCAGCGGCTTTTTTCATGA 25881
| || || ||| || || | |||||| ||| ||||||||||||||||||||
Sbjct 238 ATGAAT---TTCCTTTCTATC-AGTCGTTGGCGTGCGGGCCAGCGGCTTTTTTCATGA 291
>seq262176
Length=464
Score = 134 bits (148), Expect = 3e-27
Identities = 86/94 (91%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 32436 TCCCGCATGCCACATTGTCCAGTTTAGCGACCGGACACAGTTTGCGATGACCCCATCTGA 32495
|||| | ||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 20 TCCCACCGGCCTCATTGTCCAGTTTAGCGACCGGACACAGCTTGCGATGACCCCATCTGA 79
Query 32496 CACTGGGAGAGCGAGCAGCAACTGAAGCTTCGGC 32529
||||||||||||||||||||||||| | || |||
Sbjct 80 CACTGGGAGAGCGAGCAGCAACTGACGTTTAGGC 113
>seq185882
Length=525
Score = 132 bits (146), Expect = 1e-26
Identities = 81/86 (94%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 31385 TGTTTTTCTGATATTAGCAGCAATCTTGTTTGCGCTTTGGGACATTGCGGATTCAATCAG 31444
||||||||||| ||| |||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 241 TGTTTTTCTGACATTGGCAGCAATATTGTTTGCGCTTTGGGACATTTCGGATTCAATCAG 182
Query 31445 GGAGGAGCGGCAATGAAACAGATGAT 31470
||||||||||||||||||||||| ||
Sbjct 181 GGAGGAGCGGCAATGAAACAGATAAT 156
>seq53622
Length=425
Score = 118 bits (130), Expect = 2e-22
Identities = 73/77 (95%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 17710 GATCAATACAAGCAAATTACAGGTAGTGACTATGTCGCCAGCAAAAGCTAGCGGCTATTT 17769
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 226 GACCAATACAAACAAATTACAGGCAGTGACTATGTCGCCAGCAAAAGCTAGCGGCTATTT 167
Query 17770 TTGTGGAA-GGAAGTGA 17785
|||||||| ||||||||
Sbjct 166 TTGTGGAATGGAAGTGA 150
>seq133537
Length=297
Score = 98.7 bits (108), Expect = 2e-16
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 33861 ATGAAGCGAGTCGGATACGGCTACGTATGCAATACAGAGCAAGCAATCATTGAGAAACTA 33920
||||||||||| | |||||| || || ||| ||| || || |||| ||||| || ||
Sbjct 189 ATGAAGCGAGTTGAATACGGATATGTGAGCAGTACTGAACAGACAATAATTGAAGAATTA 248
Query 33921 TCGAGAGAAGAAAAACACATGCAAGCATTTATCTACACGAAGCC 33964
||||||||||| ||||||||||| || | ||||||||||||||
Sbjct 249 TCGAGAGAAGAGAAACACATGCAGGCGATCATCTACACGAAGCC 292
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 108894940080368
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