Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_028925.1 Length=170822 Score E Sequences producing significant alignments: (Bits) Value seq249645 152 6e-32 seq26767 129 6e-25 >seq249645 Length=476466 Score = 152 bits (168), Expect = 6e-32 Identities = 197/271 (73%), Gaps = 1/271 (0%) Strand=Plus/Minus Query 143097 TTAAGCTGGACACCATAGTCCATATGTCTGATACGGTTTTCTTCAACGCCCTTGTTGTTC 143156 |||| ||| || || ||||||||||| | || |||||| |||||||| || ||| || Sbjct 264955 TTAA-CTGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTT 264897 Query 143157 TTCAGAACGAGTAAATTTTCAACTTCCAAATGCCATAAAGGATAATAAGCAGTAGCAGCG 143216 || || || ||||| |||||||| |||||||||| || || | || ||||| Sbjct 264896 TTGAGTACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCA 264837 Query 143217 CCGCCACGGATTCCACCTTGTGAACAGGATTTAACAGCCGTTTGGAAATGTTTCCAGAAC 143276 |||||||| | ||||||||||| ||| ||||||| ||||||||||| ||| | || Sbjct 264836 CCGCCACGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAA 264777 Query 143277 GGAATAACACCAGTATGGCGAACTTCACCCATACCGATTTTCGAACCTTCAGCACGAATC 143336 |||||| |||||||| | ||||||| || ||| ||| ||||| || Sbjct 264776 GGAATACAGCCAGTATGCTGTGCTTCACCGCCACGGATAGGGCTACCAAGGGCACGGATA 264717 Query 143337 ATACCAACGTTGATGCCGATACCCGCACGCT 143367 ||| |||||||||||||||| ||||||| Sbjct 264716 CGACCTGCGTTGATGCCGATACCAGCACGCT 264686 >seq26767 Length=1149 Score = 129 bits (142), Expect = 6e-25 Identities = 305/461 (66%), Gaps = 0/461 (0%) Strand=Plus/Plus Query 143087 CATCAGGTTATTAAGCTGGACACCATAGTCCATATGTCTGATACGGTTTTCTTCAACGCC 143146 ||||| ||||||| || || |||| || | || | | | |||||||||| ||| Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92 Query 143147 CTTGTTGTTCTTCAGAACGAGTAAATTTTCAACTTCCAAATGCCATAAAGGATAATAAGC 143206 | | || || || | ||| | |||| |||||| ||| |||||||||| |||||| | Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152 Query 143207 AGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACAGGATTTAACAGCCGTTTGGAAATG 143266 ||| || || || || | | ||| ||||| ||||||||||| ||||| |||| ||||| Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 212 Query 143267 TTTCCAGAACGGAATAACACCAGTATGGCGAACTTCACCCATACCGATTTTCGAACCTTC 143326 ||| | || |||||| ||||||||| |||| || | | || |||| | Sbjct 213 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 272 Query 143327 AGCACGAATCATACCAACGTTGATGCCGATACCCGCACGCTTACTGATATATTCGATGAT 143386 |||||||| | ||| | || || || || || || || | | | ||||| | || Sbjct 273 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 332 Query 143387 TGAATTGGCCGTCTTATTAATTGACTTCAGGGAGTCAGCAGCTTCGATAACCACACAGGA 143446 ||| | | || ||||| || | || ||| || ||| || | ||||| || Sbjct 333 AGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGA 392 Query 143447 ACTGAACTGCCTGGTAGGTGTTCTGGCGCCCGCCATGATGGGCGTGGGCAACGAAACCTG 143506 || || || | ||||| ||||| | || | ||| || || || || || |||| | Sbjct 393 GCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTT 452 Query 143507 TCTTGTGGATACTGCATCATAAAAACGGCAAACGTGCTTCA 143547 || || | |||| ||||||||| ||||| |||| Sbjct 453 GAAAGTTGAAATGGCATTATAAAAACGCTGAACGTAATTCA 493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544676890708160