Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_028927.1 Length=167298 Score E Sequences producing significant alignments: (Bits) Value seq26767 219 4e-52 seq249645 132 5e-26 seq127984 89.7 5e-13 >seq26767 Length=1149 Score = 219 bits (242), Expect = 4e-52 Identities = 329/463 (71%), Gaps = 12/463 (3%) Strand=Plus/Plus Query 43561 ATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACCTTTGTTATT 43620 ||| | ||| || ||||||| | ||||| | | |||||||| | || | ||||| Sbjct 42 ATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTATT 101 Query 43621 TTTCAAAACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 43680 ||| ||||| | | | |||||| ||| |||||||| || |||||| | ||| || || Sbjct 102 TTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCCGC 161 Query 43681 GCCGCCACGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAA 43740 || || | || ||| ||||| || || ||||| |||||| | ||||||||||| |||| Sbjct 162 TCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATGTTTATAAAA 221 Query 43741 AGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGAAT 43800 ||||||| ||||||||| | |||| || | | ||| | |||| | |||||||| Sbjct 222 AGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGCACGAAT 281 Query 43801 CATACCAACGTTAATACCAATTCCAGCACGTTTGGAGATATATTCAACAATTGA---AGC 43857 | ||| | |||||||||||||| || |||| || | ||||| ||||| || || Sbjct 282 TTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACTAGT 341 Query 43858 GGAAGCCTTATTGATAGACTTTA-ATGA--ATCACCTGCCTCAATAACAACACATGAACT 43914 | ||| ||| ||||| | || || | ||||| | ||||| | ||||||||| || Sbjct 342 AGTAGCGTTA---ATAGAATCTAGATTATCATCACAT---TCAATTAAAACACATGAGCT 395 Query 43915 AAACTGTCGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAATCTGTCG 43974 ||| |||||||| ||||| | | |||| |||||| || || ||||| ||||| | Sbjct 396 AAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTTGAA 455 Query 43975 AGTAGATACTGCTTCATAAAAACGGATAACGTGTTTTAATCTA 44017 ||| || | || | ||||||||| ||||| || | |||| Sbjct 456 AGTTGAAATGGCATTATAAAAACGCTGAACGTAATTCATTCTA 498 >seq249645 Length=476466 Score = 132 bits (146), Expect = 5e-26 Identities = 275/407 (68%), Gaps = 12/407 (3%) Strand=Plus/Minus Query 43568 TGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACCTTTGTTATTTTTCAAA 43627 || || || || ||||||||||| | ||||| ||||| ||||| ||||||||| | Sbjct 264950 TGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGT 264891 Query 43628 ACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 43687 || || | |||||||| |||||||| | || || | || ||||| |||||| Sbjct 264890 ACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCA 264831 Query 43688 CGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAATA 43747 || | |||||||||||||| ||||||| || || || || ||| ||||||||||| Sbjct 264830 CGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAATA 264771 Query 43748 ACACCAGTATGGCGTACTTCACCCATGCCAATCTTAG---AACCTTCGGCACGAATCATA 43804 |||||||| || ||||||| |||| ||| ||| |||||| || | Sbjct 264770 CAGCCAGTATGCTGTGCTTCACC---GCCACGGATAGGGCTACCAAGGGCACGGATACGA 264714 Query 43805 CCAACGTTAATACCAATTCCAGCACGTTTGGAGATATATTCAACAATTG---AAGCGGAA 43861 || |||| || || || |||||||| | || | ||| || || | || || Sbjct 264713 CCTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGTGGTG 264654 Query 43862 GCCTTATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACACATGAACTAAACTGT 43921 || |||||||| | ||| |||||| || || | || || || |||||||| Sbjct 264653 GC---GTTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCTAAACTGA 264597 Query 43922 CGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAAT 43968 || | || ||||| ||| | ||| || || ||||||| ||| || Sbjct 264596 CGCGATGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGAT 264550 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 42611 TCAATATTGGGCACGACTTGATTAAAGGAGCCCTCTTTTGATTCTTTAACAGAGACTGGT 42670 ||||| | ||||||||||| || ||| ||| ||||||||| |||| | |||||| | Sbjct 265916 TCAATCTCAGGCACGACTTGCTTTAAGATGCCATCTTTTGATGCTTTGATAGAGACCAGA 265857 Query 42671 CCACGTGGAGGCTCGATACCGTTTGT 42696 |||||||| |||||||||||||| || Sbjct 265856 CCACGTGGTGGCTCGATACCGTTGGT 265831 >seq127984 Length=21361 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 140746 TAAATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAAT 140805 ||||||||||||| | | ||||||||||||| ||||||||| ||||||| ||||||| | Sbjct 19915 TAAATTGGAGCGGGTGAAGAGAATCGAACTCTCATCATCAGCTTGGAAGGCTGAGGTTTT 19856 Query 140806 ACCATTATACGATATCCGCAAA 140827 |||| || || | | ||||||| Sbjct 19855 ACCACTAAACTACACCCGCAAA 19834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533437759167040