Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_028929.1 Length=40759 Score E Sequences producing significant alignments: (Bits) Value seq260187 102 2e-17 >seq260187 Length=34880 Score = 102 bits (112), Expect = 2e-17 Identities = 217/316 (69%), Gaps = 10/316 (3%) Strand=Plus/Plus Query 37781 ATGATGAACCGTGTAGTGCTTGTAGGACGATTAACGAAAGACCCTGAATTACGTTACACT 37840 ||||| ||||| || || | || || || ||||| ||||||||| | ||||| || Sbjct 22172 ATGATTAACCGCGTCGTTTTAGTCGGTCGGTTAACTCGTGACCCTGAAATGCGTTATACG 22231 Query 37841 CC-AGCTGGAGTAGCTGTTGCGACTTTTACGCTAGCAGTAAATCGCCCATTTAAAAATGC 37899 | ||| ||| | || || || || || || || | || || |||| | | Sbjct 22232 CAGAGCGGGATT-GCGGTAACGCGATTCACACTCGCTTGTGACCGTCCGTTTACA---GG 22287 Query 37900 ACAAG--GAGAA-CAAGAAGCCGATTTCATTAATTGTGTTGTTTGGCGTAAACCAGCGGA 37956 ||||| | ||| | |||||| || ||||| |||| || |||||||| || | ||| || Sbjct 22288 ACAAGATGGGAAGCGAGAAGCTGACTTCATCGATTGCGTCGTTTGGCGCAAGCAAGCAGA 22347 Query 37957 AAACGCAGCTAATTTCTTGAAAAAAGGAAGCATGGCAGGCGTTGATGGACGTGTTCAAAC 38016 |||| ||| | | ||||||||||| ||| | ||||| ||||| || || |||| | Sbjct 22348 GAACGTTGCTCAGTATTTGAAAAAAGGGAGCCTTGCAGGTGTTGAGGGTCGCCTTCAGAT 22407 Query 38017 TCGTAATTATGAGGACAGCGACGGTAAACG-CGTTTTCGTTACTGAGGTAGTTGCTGAAA 38075 | ||| ||||| || | || ||| |||| |||| ||| | | || || || || || | Sbjct 22408 TAGTAGCTATGACGATAAAGATGGTCAACGTCGTTATCG-TGCAGAAGTCGTCGCGGATA 22466 Query 38076 CAGTTCAATTCTTAGA 38091 |||| |||| |||| Sbjct 22467 GTGTTCGATTCCTAGA 22482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129893691927256