Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_028940.1 Length=170286 Score E Sequences producing significant alignments: (Bits) Value seq26767 167 3e-36 >seq26767 Length=1149 Score = 167 bits (184), Expect = 3e-36 Identities = 322/469 (69%), Gaps = 6/469 (1%) Strand=Plus/Plus Query 145239 CATCAAATCATTGATTTGAATTCCATAATCAAGATGCCTGATTCGATTTTCTTCTACGCC 145298 |||||| | ||| ||||| | | ||||||||| || | | || ||||||||| | ||| Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92 Query 145299 TTTGTTGTTTTTAAGGACTAAAAGATTTTCTGCTTCAAGGTGCCACATTGGGTAATATAA 145358 | || ||||| | ||||| | | |||| ||||| ||||| ||||| ||| ||| Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152 Query 145359 TGTTGCCGCACCACCACGAATTCCACCTTGAGAACAACTTTTAACAGAAGCCAAGTGAGT 145418 |||||||| ||||| | || ||| ||||||||||| ||| |||| | | | | | Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCA-CTTTGAAAAT 211 Query 145419 -TTTCCAGAATGGAATAACACCCGTATGCCGCACTTCACCGTGACCAATCTTAGAACCTT 145477 ||| | || |||||| ||| ||||| |||| || | | ||| | |||| Sbjct 212 GTTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTA 271 Query 145478 CAGCGCGATACATTCCGGCGTTAACACCAATACCAGCGCGTTTACTGATATATTTGATAA 145537 | || ||| |||| || |||| |||||| || || |||| | | |||||| | || Sbjct 272 CTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAA 331 Query 145538 T-GCTTTCGTTCACT-TTGTTAATTGAATTTAGCGAATCGCCACCTTCAATTACTACACA 145595 | | | || | | |||||| |||| ||| ||| ||| |||||||| ||||| Sbjct 332 TAGAACTAGT--AGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACA 389 Query 145596 TGAACTGAATTGACGAGTTGGTGTACGTACACCTGCCATAATAGGAGTAGGCAAAGAAAT 145655 ||| || ||||| ||||| || || | || || | |||||| || || || |||||||| Sbjct 390 TGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAAT 449 Query 145656 TTGACGTTTTGATACAGCATTATAAAAACGAATAATGTGTTTCAATCTA 145704 || |||| | |||||||||||||| || || |||| |||| Sbjct 450 TTTGAAAGTTGAAATGGCATTATAAAAACGCTGAACGTAATTCATTCTA 498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542967420076480