Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_028957.1 Length=171541 Score E Sequences producing significant alignments: (Bits) Value seq249645 147 2e-30 seq26767 129 6e-25 >seq249645 Length=476466 Score = 147 bits (162), Expect = 2e-30 Identities = 197/274 (72%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 142839 TTATTCAACTGGACGCCATAGTCCATATGTCTGATGCGGTTTTCTTCAACGCCCTTGTTG 142898 || || ||||| ||||| ||||||||||| | || ||||| |||||||| || ||| Sbjct 264959 TTGTTTAACTGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTA 264900 Query 142899 TTCTTCAGAACGAGCAAATTTTCAACTTCCAAATGCCATAAAGGATAATAAGCAGTAGCA 142958 || || || || || || |||||||| |||||||||| || || | || ||| Sbjct 264899 TTTTTGAGTACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCA 264840 Query 142959 GCGCCGCCCCGGATTCCACCTTGTGAACAGGATTTAACAGCCGTTTGGAAATGTTTCCAG 143018 || ||||| || | ||||||||||| ||| ||||||| ||||||||||| ||| | Sbjct 264839 GCACCGCCACGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAA 264780 Query 143019 AACGGAATAACACCAGTATGACGAACTTCACCCATACCGATTTTCGAACCTTCAGCACGA 143078 || |||||| |||||||| | ||||||| || ||| ||| ||||| Sbjct 264779 AAAGGAATACAGCCAGTATGCTGTGCTTCACCGCCACGGATAGGGCTACCAAGGGCACGG 264720 Query 143079 ATCATACCAACGTTGATGCCGATACCCGCACGCT 143112 || ||| |||||||||||||||| ||||||| Sbjct 264719 ATACGACCTGCGTTGATGCCGATACCAGCACGCT 264686 >seq26767 Length=1149 Score = 129 bits (142), Expect = 6e-25 Identities = 305/461 (66%), Gaps = 0/461 (0%) Strand=Plus/Plus Query 142832 CATCAAGTTATTCAACTGGACGCCATAGTCCATATGTCTGATGCGGTTTTCTTCAACGCC 142891 |||||| ||||| | || || |||| || | || | | | |||||||||| ||| Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92 Query 142892 CTTGTTGTTCTTCAGAACGAGCAAATTTTCAACTTCCAAATGCCATAAAGGATAATAAGC 142951 | | || || || | ||| | ||| |||||| ||| |||||||||| |||||| | Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152 Query 142952 AGTAGCAGCGCCGCCCCGGATTCCACCTTGTGAACAGGATTTAACAGCCGTTTGGAAATG 143011 ||| || || || || | | ||| ||||| ||||||||||| ||||| |||| ||||| Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 212 Query 143012 TTTCCAGAACGGAATAACACCAGTATGACGAACTTCACCCATACCGATTTTCGAACCTTC 143071 ||| | || |||||| |||||||||| |||| || | | || |||| | Sbjct 213 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 272 Query 143072 AGCACGAATCATACCAACGTTGATGCCGATACCCGCACGCTTACTGATATATTCGATGAT 143131 |||||||| | ||| | || || || || || || || | | | ||||| | || Sbjct 273 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 332 Query 143132 TGAATTGGCAGTCTTATTGATTGACTTCAGGGAGTCTGCAGCTTCGATAACCACGCAGGA 143191 ||| | | ||| || || || | || || || ||| || | || || || Sbjct 333 AGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGA 392 Query 143192 ACTGAACTGCCGGGTAGGTGTTCTGGCGCCCGCCATGATAGGTGTGGGCAACGAAACCTG 143251 || || || || ||||| ||||| | || | ||| || ||||| || || |||| | Sbjct 393 GCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTT 452 Query 143252 TCTTGTGGATACTGCATCATAAAAACGGCAAACGTGCTTCa 143292 || || | |||| ||||||||| ||||| |||| Sbjct 453 GAAAGTTGAAATGGCATTATAAAAACGCTGAACGTAATTCA 493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546970005230880