Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_029009.1 Length=147589 Score E Sequences producing significant alignments: (Bits) Value seq158858 221 1e-52 seq149378 91.5 1e-13 >seq158858 Length=235449 Score = 221 bits (244), Expect = 1e-52 Identities = 522/776 (67%), Gaps = 22/776 (3%) Strand=Plus/Minus Query 50643 TTAAGGATGTTTAAGTCAGCAATAGCTTCACCAAATGGGATACCAAAGCTTAATTCCAAT 50702 ||||| || ||||| ||| ||||||| || |||| ||| ||||||| || Sbjct 172372 TTAAG-ATATTTAAATCACCAATAGCAGAACGGAATGTATAACCCTCATTTAATTCAAAC 172314 Query 50703 GCAATTGCTCGTAAGCAGTCATAGTTTAACTTAATTCTACGGCTAAACTTAACAACACTG 50762 ||||| || ||||||| ||| || |||||||| | | | ||| |||||| Sbjct 172313 GCAATCGCACGTAAGCTGTCGTAATTTAACTTTACACGATTTGCAAATGCTACAACATGC 172254 Query 50763 TCAATTTCACCATAGTAAGCTTCGTCTAACTTATCTTGCAAGTAAGTGCGAATTTCATCT 50822 | |||||||||| || ||| | | || |||| | ||| | ||||||| Sbjct 172253 TTGATTTCACCATGATACTGTTCAGCAATTTTGTCTTTTAGGTAGATTTCAATTTCAGTA 172194 Query 50823 GCATCAGGATATTCGAAACGTAAATGGTAATGGAAACGTCCCGGACGGTTAAGCATAAAG 50882 ||| ||||| || || || | |||||||||||| || || |||||| | | |||||| Sbjct 172193 GCAGTTGGATAATCAAATCGGATATGGTAATGGAATCGACCAGGACGGCTTAACATAAAC 172134 Query 50883 TCATTTACACGACTTAAGCTA-TTAACAGTAAGAGCGTAGATACGTTTACGTTGTGATAA 50941 |||||||| | ||||| | || || |||| || ||||||||||| || ||| || Sbjct 172133 TCATTTACCTTA-TTAAGATCGTTTACCGTAATCGCATAGATACGTTTC--TTCTGAGAA 172077 Query 50942 --ACCATCGAATAAGCTCAATAGTTTTTCTTGTGGTTCACGACCGTCA---CGGTCATTG 50996 |||||| ||||| | || || ||||| ||| ||| | ||| || |||| Sbjct 172076 GTACCATCAAATAACCCCAGTAAGTTTTCCTGTTTTTCTGCTTCTTCATTACGAGGATTG 172017 Query 50997 AATACTTTTTCAAATTCATCGAACAGGATAAGAGACTCTTGGTCAATACTGTCAATAAAT 51056 || | |||||||| ||||| || | || | | ||||||||||| ||||| || Sbjct 172016 AACATCTTTTCAAACTCATCCAAGATAATTAATGCTTCTTGGTCAATTTGTTCAATGAAA 171957 Query 51057 TCTGCAATCCCCGGATAAGCTTCTGTAATTAAGATAACAGGCATATCCTCTTCAATAGCT 51116 || |||||||| || | || | ||||| | ||||| || || |||| || || | || Sbjct 171956 TCAGCAATCCCTGGGAATGCCTTTGTAACCATAATAACCGGGATTTCCTTTTTAACAACT 171897 Query 51117 CGTTGAG--ATAAGATTTGAGTAAATAGTGATTTACCAATCCCTTTGTCTCCACTTAAAA 51174 || | ||||| |||| ||| | |||||||| || ||||||| ||||| || | Sbjct 171896 GCTTCTGCAATAAG--TTGAACAAACATAGATTTACCCATTCCTTTGTTACCACTCAAGA 171839 Query 51175 TGATTCCTAAGCTACGATTAATTGTTTTAAATGTGTGTAGCACTTTTTCAATTTTAGCTA 51234 | | ||||||||||| | || | ||| | ||| | || ||||| | |||||| || Sbjct 171838 TAAGACCTAAGCTACGTTCAAATTTTTCATATGATTTTAATACTTTATTAATTTTTTCT- 171780 Query 51235 AACGGTCA---CCGTAAACTTTAGGTTCTTTCAATTCAAAATCGTCTGT-TACTACTAAT 51290 ||| | || |||| || | ||| | ||||||| | || | | || |||| Sbjct 171779 --GGGTGACTTCCATAAATCTTTGCTTCCGTTGATTCAAAGTTATCAATCTTCT-CTAAA 171723 Query 51291 GAGAACCCAGACATTGGATTGAATCGAACTTTATAAGTTTGCGCAGGCAACTTATCATAA 51350 ||||| || || ||||||||||| ||||| || || || || | || |||||| Sbjct 171722 GAGAAACCTGATCTTGGATTGAATTCTACTTTGTATGTAGCAGCTGGTAGTTTGTCATAA 171663 Query 51351 GTTTTAAGGTCGTTTGCATAAATTTCATAGTTACTACCATAGTTGATTACTTTCAT 51406 ||||| | ||| | | ||||||| ||| |||| || |||| || | |||||| Sbjct 171662 GTTTTTAAGTCATCACCGTAAATTTTATAAGTACTTCCGAAGTTAATAATTTTCAT 171607 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 30254 TCGCAATACTCATCTTCCCAGTCAGCTAAGAAGTACATACGTTCCATAACATAATCTGAT 30313 || ||||||||||||||||| || | | || || | ||| || ||||| ||| | Sbjct 114027 TCACAATACTCATCTTCCCAATCGCCAATAAAATAGAAACGGTCAATAAC-CGTTCTACT 113969 Query 30314 GTT-TCATCTAGGAATACACCAAATAGAATTGGGTCTTTGTCTCGATTATCTTTTGCTAC 30372 || |||||| ||||| || || || || ||||| ||||| || || |||| ||| Sbjct 113968 TTTCTCATCTTGGAATGTTCCGAAGAGGATAGGGTCCTTGTCGCGGCGTTCCTTTGTTAC 113909 Query 30373 TTGTTGACCTACCTCATCTGTATAGTCTGTAAACATGATAACTAAGCGGTCAAATTTATC 30432 ||||| | |||| | ||||||| || ||||||| | | || |||| || ||||| Sbjct 113908 TTGTTTTTCAACCTTACCTGTATAATCCGTAAACACAACATAGAACTGGTCGAACTTATC 113849 Query 30433 TTGTACACGTTCAATTACAGGAACAACTTCATCTGGAATTTCACG 30477 || ||| || | |||| |||||| ||||| || ||||| || Sbjct 113848 TTTAACAGTCTCTAGAACAGCAACAACATCATCAGGTATTTCTCG 113804 >seq149378 Length=35185 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 65330 AAGACGTTAAGTTCGTTAATATGACACCATCTGCTAATGATATGCAGTTTGAAAAATGGT 65389 |||| | |||||| ||||| ||||||| || ||| |||||| | |||||||| | | Sbjct 23144 AAGATGCTAAGTTTGTTAACATGACACAGACTAGTAAGGATATGGAATTTGAAAAGTTTT 23203 Query 65390 TGAACTATTTAATCAATGTAATTTCTGCGTTGTATGGGATTGACCCTGCTGAAATTAACT 65449 ||||||| |||| |||| ||| |||| | || ||| | || | |||||||||| Sbjct 23204 TGAACTACCTAATTTATGTTATTGCTGCCGTTTACCAAATTCAGCCAGAAGAAATTAACT 23263 Query 65450 TCCCGAATAATGGGGGAGCAACTGG 65474 | || ||| ||||||||| ||||| Sbjct 23264 TTCCTAATCGTGGGGGAGCTACTGG 23288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 470579631033120