Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_029009.1
Length=147589
Score E
Sequences producing significant alignments: (Bits) Value
seq158858 221 1e-52
seq149378 91.5 1e-13
>seq158858
Length=235449
Score = 221 bits (244), Expect = 1e-52
Identities = 522/776 (67%), Gaps = 22/776 (3%)
Strand=Plus/Minus
Query 50643 TTAAGGATGTTTAAGTCAGCAATAGCTTCACCAAATGGGATACCAAAGCTTAATTCCAAT 50702
||||| || ||||| ||| ||||||| || |||| ||| ||||||| ||
Sbjct 172372 TTAAG-ATATTTAAATCACCAATAGCAGAACGGAATGTATAACCCTCATTTAATTCAAAC 172314
Query 50703 GCAATTGCTCGTAAGCAGTCATAGTTTAACTTAATTCTACGGCTAAACTTAACAACACTG 50762
||||| || ||||||| ||| || |||||||| | | | ||| ||||||
Sbjct 172313 GCAATCGCACGTAAGCTGTCGTAATTTAACTTTACACGATTTGCAAATGCTACAACATGC 172254
Query 50763 TCAATTTCACCATAGTAAGCTTCGTCTAACTTATCTTGCAAGTAAGTGCGAATTTCATCT 50822
| |||||||||| || ||| | | || |||| | ||| | |||||||
Sbjct 172253 TTGATTTCACCATGATACTGTTCAGCAATTTTGTCTTTTAGGTAGATTTCAATTTCAGTA 172194
Query 50823 GCATCAGGATATTCGAAACGTAAATGGTAATGGAAACGTCCCGGACGGTTAAGCATAAAG 50882
||| ||||| || || || | |||||||||||| || || |||||| | | ||||||
Sbjct 172193 GCAGTTGGATAATCAAATCGGATATGGTAATGGAATCGACCAGGACGGCTTAACATAAAC 172134
Query 50883 TCATTTACACGACTTAAGCTA-TTAACAGTAAGAGCGTAGATACGTTTACGTTGTGATAA 50941
|||||||| | ||||| | || || |||| || ||||||||||| || ||| ||
Sbjct 172133 TCATTTACCTTA-TTAAGATCGTTTACCGTAATCGCATAGATACGTTTC--TTCTGAGAA 172077
Query 50942 --ACCATCGAATAAGCTCAATAGTTTTTCTTGTGGTTCACGACCGTCA---CGGTCATTG 50996
|||||| ||||| | || || ||||| ||| ||| | ||| || ||||
Sbjct 172076 GTACCATCAAATAACCCCAGTAAGTTTTCCTGTTTTTCTGCTTCTTCATTACGAGGATTG 172017
Query 50997 AATACTTTTTCAAATTCATCGAACAGGATAAGAGACTCTTGGTCAATACTGTCAATAAAT 51056
|| | |||||||| ||||| || | || | | ||||||||||| ||||| ||
Sbjct 172016 AACATCTTTTCAAACTCATCCAAGATAATTAATGCTTCTTGGTCAATTTGTTCAATGAAA 171957
Query 51057 TCTGCAATCCCCGGATAAGCTTCTGTAATTAAGATAACAGGCATATCCTCTTCAATAGCT 51116
|| |||||||| || | || | ||||| | ||||| || || |||| || || | ||
Sbjct 171956 TCAGCAATCCCTGGGAATGCCTTTGTAACCATAATAACCGGGATTTCCTTTTTAACAACT 171897
Query 51117 CGTTGAG--ATAAGATTTGAGTAAATAGTGATTTACCAATCCCTTTGTCTCCACTTAAAA 51174
|| | ||||| |||| ||| | |||||||| || ||||||| ||||| || |
Sbjct 171896 GCTTCTGCAATAAG--TTGAACAAACATAGATTTACCCATTCCTTTGTTACCACTCAAGA 171839
Query 51175 TGATTCCTAAGCTACGATTAATTGTTTTAAATGTGTGTAGCACTTTTTCAATTTTAGCTA 51234
| | ||||||||||| | || | ||| | ||| | || ||||| | |||||| ||
Sbjct 171838 TAAGACCTAAGCTACGTTCAAATTTTTCATATGATTTTAATACTTTATTAATTTTTTCT- 171780
Query 51235 AACGGTCA---CCGTAAACTTTAGGTTCTTTCAATTCAAAATCGTCTGT-TACTACTAAT 51290
||| | || |||| || | ||| | ||||||| | || | | || ||||
Sbjct 171779 --GGGTGACTTCCATAAATCTTTGCTTCCGTTGATTCAAAGTTATCAATCTTCT-CTAAA 171723
Query 51291 GAGAACCCAGACATTGGATTGAATCGAACTTTATAAGTTTGCGCAGGCAACTTATCATAA 51350
||||| || || ||||||||||| ||||| || || || || | || ||||||
Sbjct 171722 GAGAAACCTGATCTTGGATTGAATTCTACTTTGTATGTAGCAGCTGGTAGTTTGTCATAA 171663
Query 51351 GTTTTAAGGTCGTTTGCATAAATTTCATAGTTACTACCATAGTTGATTACTTTCAT 51406
||||| | ||| | | ||||||| ||| |||| || |||| || | ||||||
Sbjct 171662 GTTTTTAAGTCATCACCGTAAATTTTATAAGTACTTCCGAAGTTAATAATTTTCAT 171607
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/225 (70%), Gaps = 2/225 (1%)
Strand=Plus/Minus
Query 30254 TCGCAATACTCATCTTCCCAGTCAGCTAAGAAGTACATACGTTCCATAACATAATCTGAT 30313
|| ||||||||||||||||| || | | || || | ||| || ||||| ||| |
Sbjct 114027 TCACAATACTCATCTTCCCAATCGCCAATAAAATAGAAACGGTCAATAAC-CGTTCTACT 113969
Query 30314 GTT-TCATCTAGGAATACACCAAATAGAATTGGGTCTTTGTCTCGATTATCTTTTGCTAC 30372
|| |||||| ||||| || || || || ||||| ||||| || || |||| |||
Sbjct 113968 TTTCTCATCTTGGAATGTTCCGAAGAGGATAGGGTCCTTGTCGCGGCGTTCCTTTGTTAC 113909
Query 30373 TTGTTGACCTACCTCATCTGTATAGTCTGTAAACATGATAACTAAGCGGTCAAATTTATC 30432
||||| | |||| | ||||||| || ||||||| | | || |||| || |||||
Sbjct 113908 TTGTTTTTCAACCTTACCTGTATAATCCGTAAACACAACATAGAACTGGTCGAACTTATC 113849
Query 30433 TTGTACACGTTCAATTACAGGAACAACTTCATCTGGAATTTCACG 30477
|| ||| || | |||| |||||| ||||| || ||||| ||
Sbjct 113848 TTTAACAGTCTCTAGAACAGCAACAACATCATCAGGTATTTCTCG 113804
>seq149378
Length=35185
Score = 91.5 bits (100), Expect = 1e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 65330 AAGACGTTAAGTTCGTTAATATGACACCATCTGCTAATGATATGCAGTTTGAAAAATGGT 65389
|||| | |||||| ||||| ||||||| || ||| |||||| | |||||||| | |
Sbjct 23144 AAGATGCTAAGTTTGTTAACATGACACAGACTAGTAAGGATATGGAATTTGAAAAGTTTT 23203
Query 65390 TGAACTATTTAATCAATGTAATTTCTGCGTTGTATGGGATTGACCCTGCTGAAATTAACT 65449
||||||| |||| |||| ||| |||| | || ||| | || | ||||||||||
Sbjct 23204 TGAACTACCTAATTTATGTTATTGCTGCCGTTTACCAAATTCAGCCAGAAGAAATTAACT 23263
Query 65450 TCCCGAATAATGGGGGAGCAACTGG 65474
| || ||| ||||||||| |||||
Sbjct 23264 TTCCTAATCGTGGGGGAGCTACTGG 23288
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 470579631033120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |