Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq249645 178 1e-39 seq26767 158 1e-33 seq244327 122 1e-22 >seq249645 Length=476466 Score = 178 bits (196), Expect = 1e-39 Identities = 298/430 (69%), Gaps = 6/430 (1%) Strand=Plus/Minus Query 77157 TTGATTAAACGCTTATACATCAAATCGTTAAGCTGAACGCCATAATCCAGGTGACGAATA 77216 ||||| | ||| | |||||| | ||| | ||| ||||| || |||| ||||| | | Sbjct 264983 TTGATGAGGCGCGTGTACATCGTTTTGTTTAACTGTACGCCGTAGTCCATATGACGGACA 264924 Query 77217 CGGTTATTCTCAACACCTTTGTTGTTTTTCAGAACCAGCAGGTTTTCAACTTCCAAATGC 77276 ||||| | |||||||| ||| ||||| || ||||| | |||||||| |||||| Sbjct 264923 CGGTTGTCTTCAACACCGCGGTTATTTTTGAGTACCAGTAATGACTCAACTTCTAAATGC 264864 Query 77277 CAGATCGGATAATACAACGTTGCAGCACCACCACGAACGCCACCTTGTGAACAGGATTTA 77336 || | || || ||||||| |||||||| ||||| |||||||||||||| ||| ||||| Sbjct 264863 CATAGTGGGTAGAACAACGTCGCAGCACCGCCACGTACGCCACCTTGTGAGCAGCATTTA 264804 Query 77337 ACCGCTGTCTGAATATGTTTCCAGAACGGGATCACGCCTGTATGTACTGCTTCACCACCA 77396 || || || || | ||| | || || || ||| ||||| ||||||||| ||| Sbjct 264803 ACGGCCGTTTGGAACAATTTATAAAAAGGAATACAGCCAGTATGCTGTGCTTCACCGCCA 264744 Query 77397 CGGATTTTAGAACCCATTGCGCGAATGTGTCCAGCATTAACACCGATACCCGCGCGTTGT 77456 ||||| ||| | || || || | || || || | |||||||| || || ||| Sbjct 264743 CGGATAGGGCTACCAAGGGCACGGATACGACCTGCGTTGATGCCGATACCAGCACGCTGT 264684 Query 77457 GAAATATACTTCACGATCGC---AGAGGTTACAGCATTCAGAGAACCCAGTGAATCACCT 77513 || | ||| ||||| || || ||| || || | ||| | | |||||| Sbjct 264683 GACACATAGCGTACGATGGCGCTAGTGGT---GGCGTTGATAGAGTCTAAGCTATCACCA 264627 Query 77514 GATTCAATCACTACGCAACTGGAAAACTGACGCGTAGGAGTACGCACACCCGCCATAATA 77573 |||| || | ||||| | ||||||||||| || ||||||||||| | ||| || Sbjct 264626 CATTCGATTAAGACGCACGAGCTAAACTGACGCGATGGCGTACGCACACCTGACATGATT 264567 Query 77574 GGCGTAGGTA 77583 ||||| |||| Sbjct 264566 GGCGTTGGTA 264557 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/161 (72%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 75135 TGAGTACCTTTCTGATGAAGTGCTTCATCACGGGCAATCAGACGCATGATCTTCGCGTTA 75194 || |||||| || ||| || ||||||||||| || || || ||||| || || ||| Sbjct 268924 TGCGTACCTGTCAAATGCAGCGCTTCATCACGAGCGATGAGCTTAATGATTTTGGCATTA 268865 Query 75195 CCTTCCATC---TTGCCCTGTTCGGCAAAGTTGAAAGTAAAGGTAAACGAGACATAGAAA 75251 ||||||||| |||| || | ||||| || | | | |||||||||||||||| Sbjct 268864 CCTTCCATCAATTTGCGCT---CAGCAAACGCAAACGAGCAAGCAAACGAGACATAGAAA 268808 Query 75252 CGGATCGCTTCCAGAGCGTTGACAGCGTGCATACACAGATA 75292 || || ||||| || ||||||| || || |||||||| Sbjct 268807 CGAATGGCTTCTAGGACGTTGACCGCCATGATGCACAGATA 268767 >seq26767 Length=1149 Score = 158 bits (174), Expect = 1e-33 Identities = 285/417 (68%), Gaps = 0/417 (0%) Strand=Plus/Plus Query 77171 ATACATCAAATCGTTAAGCTGAACGCCATAATCCAGGTGACGAATACGGTTATTCTCAAC 77230 ||||||||| | |||| || || ||||||| | |||||| | | || | |||| Sbjct 30 ATACATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAAT 89 Query 77231 ACCTTTGTTGTTTTTCAGAACCAGCAGGTTTTCAACTTCCAAATGCCAGATCGGATAATA 77290 || | || ||||| | ||| | | |||||| ||| |||||||| || |||||| | Sbjct 90 GCCCCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAA 149 Query 77291 CAACGTTGCAGCACCACCACGAACGCCACCTTGTGAACAGGATTTAACCGCTGTCTGAAT 77350 | ||||| || ||||| | ||| || ||||| ||||||||||| || || | |||| Sbjct 150 TATAGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAA 209 Query 77351 ATGTTTCCAGAACGGGATCACGCCTGTATGTACTGCTTCACCACCACGGATTTTAGAACC 77410 |||||| | || || || || ||||| | |||||| ||| | || | ||| Sbjct 210 ATGTTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACC 269 Query 77411 CATTGCGCGAATGTGTCCAGCATTAACACCGATACCCGCGCGTTGTGAAATATACTTCAC 77470 | ||| ||||| | ||||||||||| ||| || || || ||||| |||| ||| || || Sbjct 270 TACTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTAC 329 Query 77471 GATCGCAGAGGTTACAGCATTCAGAGAACCCAGTGAATCACCTGATTCAATCACTACGCA 77530 || | | || ||| || | |||| | || |||| | ||||||| | || || Sbjct 330 AATAGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACA 389 Query 77531 ACTGGAAAACTGACGCGTAGGAGTACGCACACCCGCCATAATAGGCGTAGGTAACGA 77587 | ||| || || |||||||| | || || | |||||| || || ||||| || Sbjct 390 TGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGA 446 >seq244327 Length=1302 Score = 122 bits (134), Expect = 1e-22 Identities = 208/302 (69%), Gaps = 0/302 (0%) Strand=Plus/Plus Query 75533 AATATGCGTATAACTGCGACTGTGAATTGTTTCACTGAAAGCCCATGTTTCGATCCACGT 75592 |||||| |||||| || |||||| ||||| |||| ||||||||| ||||| || Sbjct 848 AATATGAGTATAAGAACGTGAGTGAATAGTTTCCGAAAAAGACCATGTTTCAATCCAGGT 907 Query 75593 TTCCATTGAAACATCAGAGGCAATCGGGAGAAACGCCAGGTTAGGGCCGCGTCCCTGAAT 75652 ||| | | | ||| ||| || ||||| || | |||||| | | ||| ||||| Sbjct 908 TTCTAATTCCGGAATAGAAATAATTGGTAGAAAAGCAATGTTAGGACTTCTTCCTTGAAT 967 Query 75653 GGTATCTAACAGGGTTTGATATTGCAGGTTAGAATCAAAAATGATTTTTTCGTGTTCCGG 75712 | ||||| | |||||||||| | ||| | |||||| |||||| ||||| || Sbjct 968 AGAGTCTAATAATGTTTGATATTTTAAATTACTAAGAAAAATATGTTTTTCATGTTCAGG 1027 Query 75713 CATTTTTGCATACTGCATACGGTCTATCGACAGATCCACTTCTTCCGGTCGCCAGAAGAA 75772 | ||| | | | || | ||| || ||||| | |||||| |||| ||| || || Sbjct 1028 TAAATTTTGAAAATCTATTCTATCTCGAGAGAGATCTATTTCTTCAGGTCTCCAAAAAAA 1087 Query 75773 TGACAGTTGTTTTTCAGTCAAAGTTTCGAATACGCGATGTTTTTGTTCTTCATATCGGGC 75832 || |||||||||||| | || |||| || | || |||||| | ||||||||||| Sbjct 1088 AGAGAGTTGTTTTTCAATTAATTTTTCAAAAATATTATATTTTTGCTGATCATATCGGGC 1147 Query 75833 AA 75834 || Sbjct 1148 AA 1149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566574699210240