Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_029024.1 Length=56505 Score E Sequences producing significant alignments: (Bits) Value seq41419 143 1e-29 seq244907 116 1e-21 seq111334 116 1e-21 seq237334 114 5e-21 seq127547 93.3 2e-14 seq255890 87.8 6e-13 >seq41419 Length=13203 Score = 143 bits (158), Expect = 1e-29 Identities = 139/175 (79%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 49015 AAAAAGGGAGATCGCATCGCCCAAGGTGTCATAGCGCCAGTCGAAACAGCTAATTTTGTT 49074 ||||||| | | |||||||| ||||| ||||||||| |||| | ||||||| |||||||| Sbjct 1716 AAAAAGGTACA-CGCATCGCTCAAGGCGTCATAGCGTCAGTAGTAACAGCTCATTTTGTT 1658 Query 49075 GAGGTAGACGAGCTATCACGTAGTGATCGTGGGACAGGTGGATTTGGAAGTACGGGCGTA 49134 ||||| |||||||||| |||||| || || || ||||||| | |||||| Sbjct 1657 GAGGTGGACGAGCTATTGGTTAGTGAACGAGGTGTTGGCGGATTTGAATCTACGGGAACG 1598 Query 49135 AAGTAAGACAAAATTTGAATTTTATTAAAAAAGGAGAATGAGAGATGAATATGTA 49189 ||||||||||||||||||||||||||| ||||| || | | ||| |||| |||| Sbjct 1597 AAGTAAGACAAAATTTGAATTTTATTA-AAAAGAAGGA--ACAGAGGAATTTGTA 1546 >seq244907 Length=5965 Score = 116 bits (128), Expect = 1e-21 Identities = 213/310 (69%), Gaps = 4/310 (1%) Strand=Plus/Minus Query 56198 AAGAAAAAGTTAGTGGGGCTACGACAGACAGACCTGAGTTATTACGCATGTTAGACAATC 56257 |||||||||| || || || ||| |||||||| | | ||||||| |||| Sbjct 3831 AAGAAAAAGTATCAGGTGCCACCCAAGATAGACCTGAACTTCAAAATATGTTAGGTAATC 3772 Query 56258 TGCGTGAAGGTGATGTAATTGTAGTGACTGAATTAGCACGTATTACAAGAAGTACACAGG 56317 | ||||| || | ||| ||||| || ||| |||| ||||| |||||||| || Sbjct 3771 TTAAAGAAGGAGACATCATTTATGTGACAGATTTAACACGAATTACTCGAAGTACAAGGG 3712 Query 56318 ACTTATTTAAACTTATAGAAACAATTAAAGAAAAAGGTGCTTCTATTAAGTCGTTAAAAG 56377 | |||||| || | | || || ||| | ||| || | | || || ||||||| Sbjct 3711 ATTTATTTGAATTAGTTGATTACATAAAAAATAAACAAGCCAATTTAAAATCATTAAAAG 3652 Query 56378 ATAATTGGCTTGA--TACTACAAGTGATAATCCGTACAGCACTTTCTTACTTACTGTAAT 56435 ||| |||| | || || | ||| | ||||| || || ||||||| | || ||||| Sbjct 3651 ATACTTGGTTAGACTTATCAGAAG--AAAATCCATATAGTCATTTCTTAATGACAGTAAT 3594 Query 56436 GGCTGGTGTTAACCAGTTAGAACGGGACCTAATTCGAATGCGACAACGAGAAGGCATTGA 56495 || || || || || |||||| ||||| ||||||||||||| || || ||||| ||| Sbjct 3593 GGGAGGAGTAAATCAATTAGAAAGGGACTTAATTCGAATGCGTCAGCGTGAAGGAATTAC 3534 Query 56496 ACTAGCTAAA 56505 || |||||| Sbjct 3533 CCTTGCTAAA 3524 >seq111334 Length=48914 Score = 116 bits (128), Expect = 1e-21 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 2299 ATGGAGCATGCTTTAGAGCTGCTTGTAAACCGAAAGGAAAACAAGTTTACAGTTAAAAAG 2358 || || ||||||||||||||||||| || || | ||||| | ||||||||| ||| Sbjct 2503 ATAGATCATGCTTTAGAGCTGCTTGCTAATCGTGAAGAAAATGGATATACAGTTAAGAAG 2562 Query 2359 ATATGCGAAGTTACTGGCGTGAGTCGTACGGTTCTTTACGAGAGAGCAAAAGAAAAGGGG 2418 ||||| ||||||||||| || ||||||| |||||||| |||| |||||||||| || Sbjct 2563 ATATGTGAAGTTACTGGTGTAAGTCGTAAAGTTCTTTATAAGAGGACAAAAGAAAAAGGA 2622 Query 2419 ATTATGTAG 2427 |||||||| Sbjct 2623 GTTATGTAG 2631 >seq237334 Length=23019 Score = 114 bits (126), Expect = 5e-21 Identities = 116/147 (79%), Gaps = 3/147 (2%) Strand=Plus/Minus Query 43051 ATTATGTACCTCTATTATATCACAGTCGTTTCTTCTAAGTAAATAAGGAGTGAAAGCCTA 43110 |||| || || |||||||||| | ||||| || ||||||||||||||||| |||| Sbjct 4736 ATTAGCTAACTTTATTATATCATAAAT-TTTCT-CTCGGTAAATAAGGAGTGAAATCCTA 4679 Query 43111 TGTTAGATAAAAATCAATCGAAAGTCGTCCTTCCTTCATGGGTATGGGAGGGCGTGAAAA 43170 | | |||||||||| |||| || ||||| |||| | ||| ||||| || ||| | || Sbjct 4678 TAT-AGATAAAAATTAATCAGAAATCGTCTTTCCGACGTGGATATGGAAGAACGTAAGAA 4620 Query 43171 ACGAAAAAGAAGCGAAATTGAGGGCGA 43197 ||||||||||||| ||||||| ||||| Sbjct 4619 ACGAAAAAGAAGCAAAATTGAAGGCGA 4593 >seq127547 Length=18788 Score = 93.3 bits (102), Expect = 2e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 55598 ACGAAAGAATTAAGCGAAGAGTTAGAGAAGCGTGAAGGCGTTACAACGATTAATGTAGAG 55657 ||| |||||||||| | |||||| ||||||| |||| |||| | ||||| | || Sbjct 217 ACGCAAGAATTAAGTAACGAGTTAAAGAAGCGGAAAGGGATTACTTCTATTAAGATTGAA 276 Query 55658 CCTTATGAAAAGATTGAGGTTGGCGGTATTGTGGTTGATGGTCCTGCGATTGTCTTGATT 55717 ||||||||||| ||||| ||||| || ||||| || ||||| || || || | || ||| Sbjct 277 CCTTATGAAAAAATTGAAGTTGGTGGAATTGTTGTAGATGGACCGGCTGTTATTTTAATT 336 Query 55718 AATAAGGATTA 55728 ||| | || || Sbjct 337 AATCAAGAATA 347 >seq255890 Length=19928 Score = 87.8 bits (96), Expect = 6e-13 Identities = 80/97 (82%), Gaps = 8/97 (8%) Strand=Plus/Plus Query 52108 AAAGAGCAGCTAGCAAAAGCTAACTGCTC-----AGGTAAT-GGAGAAAGATTACCATGT 52161 ||| |||||||||||| |||||||||||| ||| ||| |||||||||| ||||||| Sbjct 1946 AAAAAGCAGCTAGCAATAGCTAACTGCTCATATAAGGGAATCGGAGAAAGATAACCATGT 2005 Query 52162 CATCTATAGTATTGACGGAATATTGAG-TTTTATTCA 52197 || ||| |||| |||||||||| || ||||||||| Sbjct 2006 -GTCCATATTATTAACGGAATATTAAGTTTTTATTCA 2041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180120996587912