Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_029046.1 Length=50827 Score E Sequences producing significant alignments: (Bits) Value seq260187 95.1 4e-15 seq28607 84.2 7e-12 seq2866 82.4 2e-11 >seq260187 Length=34880 Score = 95.1 bits (104), Expect = 4e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 18136 TCGCCGAGATCACCTCCGG--CTTGAAGTCGCTCGCCAGAGAGCTCGATATCGCCGTCGT 18193 || ||||||| || ||| |||||||||||| ||| | || ||||| || ||||| | Sbjct 26582 TCTCCGAGATTTCC--CGGTCCTTGAAGTCGCTTGCCCGTGAACTCGAAGTCCCCGTCAT 26639 Query 18194 TTTGCTGTCGCAGCTTAATCGAGCAGTCGAGAGCAGAGAGGATAAGCGACCTCTTCTCTC 18253 | | | || ||| | || | ||| |||||| | ||||||| || || | | || Sbjct 26640 TGCGTTATCCCAGTTATCGCGGGGAGTGGAGAGCCGGCAGGATAAACGGCCGATGATGTC 26699 Query 18254 AGACCTTCGCGATTCCGGTGCGATCGAGCAGGACGCCGACATGATCGCGTTCTTGTTCCG 18313 || | || || ||||| |||||||||||||| ||||| || |||| ||||||| ||| Sbjct 26700 CGATATCCGGGAATCCGGAGCGATCGAGCAGGATGCCGATATCGTCGCTTTCTTGTACCG 26759 Query 18314 TGAGGCCTACTAC 18326 || | |||||| Sbjct 26760 CGATGATTACTAC 26772 >seq28607 Length=83266 Score = 84.2 bits (92), Expect = 7e-12 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 21142 TTTCAAGTCGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGG 21201 ||||| ||| ||||||||| |||||||||| ||||||||||| |||||| | || Sbjct 36378 TTTCATCGCGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGG 36319 Query 21202 TTCGAATCCTGTCTCCGCAAC 21222 ||| ||||||||||||||||| Sbjct 36318 TTCAAATCCTGTCTCCGCAAC 36298 >seq2866 Length=853 Score = 82.4 bits (90), Expect = 2e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 ||| || |||||||||||||||||| ||||||||||| ||| ||||||||| |||| Sbjct 76 CGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAATC 17 Query 21210 CTGTCTCCGCAACCA 21224 ||| | ||||||||| Sbjct 16 CTGCCCCCGCAACCA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162009054770104