Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_029046.1
Length=50827
Score E
Sequences producing significant alignments: (Bits) Value
seq260187 95.1 4e-15
seq28607 84.2 7e-12
seq2866 82.4 2e-11
>seq260187
Length=34880
Score = 95.1 bits (104), Expect = 4e-15
Identities = 138/193 (72%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 18136 TCGCCGAGATCACCTCCGG--CTTGAAGTCGCTCGCCAGAGAGCTCGATATCGCCGTCGT 18193
|| ||||||| || ||| |||||||||||| ||| | || ||||| || ||||| |
Sbjct 26582 TCTCCGAGATTTCC--CGGTCCTTGAAGTCGCTTGCCCGTGAACTCGAAGTCCCCGTCAT 26639
Query 18194 TTTGCTGTCGCAGCTTAATCGAGCAGTCGAGAGCAGAGAGGATAAGCGACCTCTTCTCTC 18253
| | | || ||| | || | ||| |||||| | ||||||| || || | | ||
Sbjct 26640 TGCGTTATCCCAGTTATCGCGGGGAGTGGAGAGCCGGCAGGATAAACGGCCGATGATGTC 26699
Query 18254 AGACCTTCGCGATTCCGGTGCGATCGAGCAGGACGCCGACATGATCGCGTTCTTGTTCCG 18313
|| | || || ||||| |||||||||||||| ||||| || |||| ||||||| |||
Sbjct 26700 CGATATCCGGGAATCCGGAGCGATCGAGCAGGATGCCGATATCGTCGCTTTCTTGTACCG 26759
Query 18314 TGAGGCCTACTAC 18326
|| | ||||||
Sbjct 26760 CGATGATTACTAC 26772
>seq28607
Length=83266
Score = 84.2 bits (92), Expect = 7e-12
Identities = 67/81 (83%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 21142 TTTCAAGTCGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGG 21201
||||| ||| ||||||||| |||||||||| ||||||||||| |||||| | ||
Sbjct 36378 TTTCATCGCGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGG 36319
Query 21202 TTCGAATCCTGTCTCCGCAAC 21222
||| |||||||||||||||||
Sbjct 36318 TTCAAATCCTGTCTCCGCAAC 36298
>seq2866
Length=853
Score = 82.4 bits (90), Expect = 2e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209
||| || |||||||||||||||||| ||||||||||| ||| ||||||||| ||||
Sbjct 76 CGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAATC 17
Query 21210 CTGTCTCCGCAACCA 21224
||| | |||||||||
Sbjct 16 CTGCCCCCGCAACCA 2
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 162009054770104
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |