Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_029048.1 Length=131326 Score E Sequences producing significant alignments: (Bits) Value seq158858 131 1e-25 seq145593 86.0 5e-12 >seq158858 Length=235449 Score = 131 bits (144), Expect = 1e-25 Identities = 356/551 (65%), Gaps = 8/551 (1%) Strand=Plus/Minus Query 93623 ATTTATCATTTTCTCTAATGTTAAATCACAATACTCATCTTCCCAATCTCCAAGATAATA 93682 ||| | ||| || ||||| || | ||||||||||||||||||||||| |||| | |||| Sbjct 114052 ATTAACCATCTTATCTAACGTAAGGTCACAATACTCATCTTCCCAATCGCCAATAAAATA 113993 Query 93683 GAATCTATCTACAATAGCTCTGCTTTTCTCATCTGAAAAAACACCAAATAGTATTGGGTC 93742 ||| | || | || | ||| |||||||||||| || || || || || ||||| Sbjct 113992 GAAACGGTCAATAACCGTTCTACTTTTCTCATCTTGGAATGTTCCGAAGAGGATAGGGTC 113933 Query 93743 TTTATCTCTTCTCTCTTTGCTTATTTCCTTTGTAATTTTACCTGTATAATCAGTAAACAA 93802 || || | | || || ||| || ||| || |||||||||||||| ||||||| Sbjct 113932 CTTGTCGCGGCGTTCCTTTGTTACTTGTTTTTCAACCTTACCTGTATAATCCGTAAACAC 113873 Query 93803 AACATACATTTTATCAAATATATCTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 93862 |||||| | | || || ||||||| Sbjct 113872 AACATAGAACTGGTCGAACTTATCTTTAACAGTCTCTAGAACAGCAACAACATCATCAGG 113813 Query 93863 NNNNNNNCtttcataattttcaagttctattatttttactgtatttttagatatatcatc 93922 | ||| ||| ||||||| || || || ||||||| |||||| || | || Sbjct 113812 TATTTCTCGTTCGTAACTTTCAAGATCCTGAATCTTAACTGTATCTTTAGAAATGTTCTC 113753 Query 93923 aatatatttttctatatcttctttataCACAAATGTATCTATTCCCAGCTCTATTACATT 93982 ||| ||| ||| || || || || ||||||||||| | | ||||| || ||| | Sbjct 113752 GATAAATTCTTCGATGTCATCACGGTAAACAAATGTATCGA-TACCAGC-CT-GCACAAT 113696 Query 93983 TCT---TTCTTTTTCAATACATTCAAGTAAAAACATTAATTTCTTAGCACCCtttttttG 94039 || |||||||||||| ||| | ||| |||||||||||| | | || |||| Sbjct 113695 GCTACGTTCTTTTTCAATTGTTTCTAAATGAAAGATTAATTTCTTAATAGCTTTAGTTTG 113636 Query 94040 ACCAGTTACAATATATTTGTTTAAAAGAATCAAAGAGttttcatatattatatcaagctt 94099 ||||| | | || ||||| |||||| | | | |||| ||||| || | | || | Sbjct 113635 GCCAGTGATTTTGTACTTGTTCAAAAGAGTAAGACAGTTATCATAGATGTTTACGAGTTC 113576 Query 94100 ttcat-ttgtatttttttgctttctatttttAATATCTTCAAAATAATCTCTAGGTGTTA 94158 || || | ||| | || |||| | ||| ||| |||||| || || || || |||| Sbjct 113575 TTGATCATCTATCGTATT-CTTTTTGCCTTTTATAATTTCAAAGTATTCGCTTGGCGTTA 113517 Query 94159 ATTCTATATTC 94169 |||| |||| Sbjct 113516 GTTCTTGATTC 113506 >seq145593 Length=21497 Score = 86.0 bits (94), Expect = 5e-12 Identities = 210/314 (67%), Gaps = 6/314 (2%) Strand=Plus/Minus Query 86801 ATAGTTTCACTACATACGTTTCCTGCTGTAGATACAAAATAGCTTCTAGTCCATAAACTA 86860 || ||||| || | || ||||| || || || || || ||| | ||||| | ||| Sbjct 21495 ATTGTTTCGCTCGACACCTTTCCGGCGGTCGAAACGAAGTAGGAACGCGTCCAAAGACTT 21436 Query 86861 GGCATTT-TTGATAATTCAATAAATTCTTCTCTTAATATTTTACTTGTATAGCCTTTTAT 86919 |||| | |||| || | |||||| ||||||| ||||| ||| |||||| || Sbjct 21435 GGCAAGTGTTGAAGATG-AGGAAATTCCCCTCTTAACTTTTTAGATGTCACGCCTTTGAT 21377 Query 86920 ATTTTGCATTATATCAGAAGGATTTAGAGTCGGAAGACTATTTAAAAACATATGTGTATG 86979 ||| ||| ||||||| |||| | || || || | ||| | |||| ||||||||| Sbjct 21376 TTTTGCCATGATATCAGCAGGACTGAGTGTTGGTGGGGCATTGAGGAACAGATGTGTATG 21317 Query 86980 GTCTTTATCGCATTCTATTGCAACAATTTCGATATCCATTTCCTTACACTTATTT--TTA 87037 |||| ||||||||||| | | | | | ||| || | ||| ||| || | | Sbjct 21316 ATCTTGATCGCATTCTAAGGTGATAGTATGGATTTC--TAAGCTTTCACAGATCTCCTGC 21259 Query 87038 ACTAATGTTTTAAATCTATCTTCTAAACCTTCTATATTAAATATTTTTCTTTTATATCTA 87097 || ||| ||| || | |||||| | | | | | |||||||| ||| |||||| | Sbjct 21258 ACCAATTCTTTGAAACGTCCTTCTACATCGTTTCGAAGGAATATTTTCCTTCTATATCGA 21199 Query 87098 GGGCAGAATACAAA 87111 ||||| || || || Sbjct 21198 GGGCAAAAAACGAA 21185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418750141064996