Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_029069.1 Length=165031 Score E Sequences producing significant alignments: (Bits) Value seq158858 150 2e-31 seq149378 98.7 1e-15 >seq158858 Length=235449 Score = 150 bits (166), Expect = 2e-31 Identities = 145/186 (78%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 79583 GAACGTATTAGTCAAAACAAAAAATGGGGAGTTCAACGTCATCATATGGGTGCTTGGTTA 79642 |||||| || ||||||| |||| ||||| ||||||| || | ||| ||| | ||| || Sbjct 231941 GAACGTCTTCGTCAAAATGAAAAGTGGGGTATTCAACGACACCCTATTGGTACATGGCTA 232000 Query 79643 GCTATCTTAGCCGAAGAGTTTGGAGAAGTTTCTCAAGCCATGCAAGGACCATTAGGCTTA 79702 ||||||||| ||||||||||||||||| | |||||| ||| | |||||| ||| Sbjct 232001 TCTATCTTAGGAGAAGAGTTTGGAGAAGTATGCCAAGCCGCTCAAAGTGAATTAGGATTA 232060 Query 79703 ACAAGTATGAAAGAAACAGATGCAGATGATTTATATAAGGAATTAATTCAAGTGGCTGCT 79762 | ||| ||||||| ||||||||||| ||||||||| ||||| ||||| || || || Sbjct 232061 GCTAGTGTGAAAGATACAGATGCAGACAATTTATATATGGAATGTATTCATGTTGCAGCC 232120 Query 79763 GTTGCT 79768 |||||| Sbjct 232121 GTTGCT 232126 >seq149378 Length=35185 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/174 (74%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 124169 GAATATATGGCAAGTTTAGCTAATCAAACTGTCCAATCGGCAAATACCGTGT--ACTTTA 124226 || |||||||||| | || || ||||| || || | | || |||| | | | | Sbjct 32785 GACTATATGGCAACACTTGCAAAGCAAACGGTTGAAACCGGTAA--CCGTATTTATATCA 32842 Query 124227 TGATTAAGAACGTTCCGATTGCCCGCGCTCAATCTATCAGCT-CTGAACGTTCATTCGGT 124285 |||||||||||| |||| || |||||||| || | || ||| || ||||||||| Sbjct 32843 TGATTAAGAACGAAGTTATTGGTCGTGCTCAATC-ATTAACTGGTGACCGCTCATTCGGT 32901 Query 124286 ACTCAAGGTGTTTACCAAATTGGTTCCATCATGCCACAGGAACACGTATACTTA 124339 || |||||||| || || ||||||| ||||||||||| |||||||||| |||| Sbjct 32902 ACCCAAGGTGTGTATGAACTTGGTTCAATCATGCCACATGAACACGTATTCTTA 32955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526207591402080