Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_029073.1 Length=141298 Score E Sequences producing significant alignments: (Bits) Value seq86476 266 3e-66 seq10519 145 7e-30 seq255890 98.7 9e-16 >seq86476 Length=47718 Score = 266 bits (294), Expect = 3e-66 Identities = 536/790 (68%), Gaps = 4/790 (1%) Strand=Plus/Plus Query 48700 CCTTTTAATACTTGAATAGCCTCTTTGACTTCATTTGCATTTCCCACTTCATATCCTAAT 48759 |||| | ||||| || || || |||||||| |||||||| || | ||| | ||| | Sbjct 22546 CCTTGGAGTACTTCGATCGCTTCCTTGACTTCGTTTGCATTCCCGATTTCGTTTCCGAGC 22605 Query 48760 GGCTGATTCATATCTGTAATGACTGCAATTGTTTTTCGATTCAGATTTTTTCCAATATCA 48819 ||||||| ||| || || ||||| || || || || || || | | |||| || || Sbjct 22606 GGCTGATCCATGTCAGTGATGACGGCGATCGTCTTCCGGTTAACACTTTTCCCGATTGAT 22665 Query 48820 ACCATTTCTTGTGCTAATGCTTTAGAGTCTTCTAATGTTTTCATAAATGCTCCATTTCCT 48879 |||||||| || | ||||| | ||||| |||| ||||| || || ||| || Sbjct 22666 ACCATTTCCGTCGCAAGCGCTTTTGCATCTTCAAATGACTTCATGAAAGCACCAGAACCC 22725 Query 48880 GTTTTAACATCTAATACAATTGCATCTGCTCCCATTGCGAtttttttACTCATAATGCTA 48939 |||||||| || | || || || || || |||||||||||| ||| || Sbjct 22726 GTTTTAACGTCAAGGACGATGCTGTCCGCACCGGCTGCGATTTTTTTCGACATGATTGAG 22785 Query 48940 CTAGCAATTAATGGAATTGAATTAACTGTTCCAGTAACATCGCGTAATGCATATAATTTT 48999 || || || || ||||| || || || || | || || || ||||| ||||| |||||| Sbjct 22786 CTTGCGATCAACGGAATCGAGTTGACCGTCGCCGTCACGTCACGTAACGCATACAATTTT 22845 Query 49000 TTGTCGGCAGGCACTAAAATTCCACTTTGTCCAACTAATGCGATTTTATGTGTA-TTAAC 49058 || ||||| || | | || |||| || | | ||| || ||| ||| || || Sbjct 22846 TTATCGGCTGGTGTCAGGTTACCCGTTTGACCGATGATTGCCATCTTAA-TGTCGTTGAC 22904 Query 49059 TTGATTAATAAATTGTTCTCTTGTTAATTCTACGTTAAAGCCTTGTATAGATTCTAATTT 49118 |||| || ||| |||| || ||||| || | || || | | | ||| | || Sbjct 22905 TTGAGAAACGAATGCTTCTTCCGTCAATTCCACATCGAATCCCGGGAATGCTTCGAGCTT 22964 Query 49119 GTCAATTGTTCCTCCTGTGTGCCCTAAACCTCTACCTGACATTTTAGCAACAGGAATACC 49178 || || ||||| |||||||| || | ||| | || ||| || || |||||||| || Sbjct 22965 ATCGATCGTTCCGCCTGTGTGGCCAAGACCACGTCCGCTCATCTTCGCGACAGGAATTCC 23024 Query 49179 CAAAGAAGCAACCAATGGAGCAACGATTAAACTAATTTTATCGCCGACTCCACCTGTGGA 49238 | || || || | ||| || ||||| | ||| || |||||||||||||| ||||| || Sbjct 23025 GATTGATGCGACAAGTGGTGCGACGATCAGACTGATCTTATCGCCGACTCCGCCTGTTGA 23084 Query 49239 ATGTTTATCTACTTTTACACCTTCGATTTTTGATAGGTCAATTGTTTCACCAGAATTAAT 49298 ||||| || |||||| ||| | ||| ||||| ||||| ||||| || | | Sbjct 23085 GTGTTTGTCGACTTTTTTACCGTGGATGCGTGATAAATCAATCACGTCACCTGATTCGAC 23144 Query 49299 CATGGCATTAGTTAAGGCAGAGATTTCTTCTTTAGACATGCCATTGA-AATAAATTGCCA 49357 ||| || | ||||| | | |||||| | |||||||| |||| | ||||||||| Sbjct 23145 CATCGCCATCGTTAAATCCGCGATTTCGCGGTCCGACATGCC-TTGATAGAAAATTGCCA 23203 Query 49358 TTAACATAGAAGCCATTTGATAATCAGGAATGTCGCCGTTCGTGTAACCGCGGATGATAA 49417 | |||| | | |||||| ||||| ||||| || ||||||||| | || || || Sbjct 23204 TCGACATGGCTGACATTTGGTAATCCGGAATATCACCGTTCGTGAATCCTTCGACCATCG 23263 Query 49418 AATCAATTTCTTCTTTTGAAAGCTCATAACCATCCCGTTTTTTCGCAATTAAATCGACCA 49477 | ||| || || ||| | ||| ||| || |||||| | ||||| ||||| |||| Sbjct 23264 CTTTAATATCGGCTGTTGGTAACTCGCCACCGTCTCGTTTTGTTGCAATCAAATCTACCA 23323 Query 49478 TTCTCATGAT 49487 | | ||| || Sbjct 23324 TACGCATAAT 23333 >seq10519 Length=37031 Score = 145 bits (160), Expect = 7e-30 Identities = 196/273 (72%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 5821 ATGAACAAAAAGGAATTGGTTAAAGCTGTTGTGGAGGTTACTGGATTACCTAAGAAAGAT 5880 |||||||||| ||| | || |||| ||||| || | || | |||| ||||| Sbjct 7261 ATGAACAAAACTGAACTCATTCAAGCAGTTGTCGAAAAATCAGGTCTGACTAAAAAAGAC 7202 Query 5881 GTGACTGCTGTAATTAATACAACATTTGATAAGATTACGGAAACTCTTAAAAATGGTGAT 5940 ||||| || || | ||||||| || |||||| || || ||| | ||| || Sbjct 7201 GTGACGAAAGTTGTTGAATCAACATTCGAATCGATTACTGAGACACTTCAGTCTGGAGAA 7142 Query 5941 AAAGTTAAATTGTTCGGATTCGGTAATTTTGAAGTTCGTGAGCGTGCAGCTCGTAAAGGT 6000 ||||| ||||| | || || ||||| || ||||| ||||| || ||||||||||||||| Sbjct 7141 AAAGTCCAATTGATTGGCTTTGGTAACTTCGAAGTCCGTGAACGCGCAGCTCGTAAAGGT 7082 Query 6001 CGGAATCCTCAAACTGGAGAAGAAATTGAAATTCCAGCAACTAAATCCCCTGCTTTCAAA 6060 || || || | || |||||| || ||||| ||||||| ||| |||||||||||| Sbjct 7081 CGCAACCCACGTACAAAAGAAGATATCGAAATCCCAGCAAGCAAAGTACCTGCTTTCAAA 7022 Query 6061 CCTGCAAAAGCGTTAAAAGATGCGGTTAAATAA 6093 || | ||||| || |||||||| || || ||| Sbjct 7021 CCAGGTAAAGCATTGAAAGATGCTGTCAAGTAA 6989 >seq255890 Length=19928 Score = 98.7 bits (108), Expect = 9e-16 Identities = 173/249 (69%), Gaps = 15/249 (6%) Strand=Plus/Plus Query 105220 GCAGTAGCATCCACTTCTTTCAACCATGAAAGCTCCTTTTTCAATTGAGTTAATTGTTTT 105279 ||| || |||||||||||| | ||| |||||| || |||| || || |||| Sbjct 734 GCAATACTATCCACTTCTTTTAGCCAAACAAGCTCTTTCTTCATGGCAGGTA---GTTTG 790 Query 105280 GC---GCAAACATTATAACTCAATCCTTTTCCTGTTTGTTCGTATGTCTCATTCCATTTG 105336 || ||| | | ||| |||| ||||||||||| | || ||||| | ||||||| | Sbjct 791 GCAGAGCATATACCATAGGTCAAGCCTTTTCCTGTCTCTTTGTATGCGTGATTCCATAAG 850 Query 105337 GCGAGAAAATAGTTGAACACGAATCGACTACAACCAAATGTCTTATTGATT--AATTCAG 105394 | || |||| ||||| || || ||| ||| |||| || || |||||| |||| | Sbjct 851 GATAGGAAATGATTGAATACAAAGCGAGAACACCCAATCGTTTTGTTGATTAGAATT--G 908 Query 105395 CTTGCTCTTTTGTAGGATAGATTCGAAATTTAAACGCCTTATGCAT-----TTACATTCA 105449 |||| ||| | |||||||| ||||| ||| | || |||| ||| || ||||| Sbjct 909 CTTGTGCTTGATTTGGATAGATACGAAACTTATAGGCTTTATTCATCATTATTTGATTCA 968 Query 105450 CCTCCTTTT 105458 ||||| ||| Sbjct 969 CCTCCATTT 977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450515676287040