Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_029091.1 Length=168771 Score E Sequences producing significant alignments: (Bits) Value seq26767 167 3e-36 seq249645 111 2e-19 >seq26767 Length=1149 Score = 167 bits (184), Expect = 3e-36 Identities = 280/404 (69%), Gaps = 6/404 (1%) Strand=Plus/Minus Query 41873 CGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCAACCCCAATTATGGCAGGT 41932 ||||||||| ||||| |||| ||| || |||| || || || ||||||||| | || Sbjct 479 CGTTTTTATAATGCCATTTCAACTTTCAAAATTTCTTTACCGACACCAATTATGTCTGGA 420 Query 41933 GCTCGTACTCCGACTCGCCAGTTCTCTAGTT---GTGTAGTTATTGAAGCCGGTGATTCG 41989 | | | ||||| ||||| || || ||| | |||| | |||||| | |||| Sbjct 419 GTTAGAACTCCTACTCGACAATT---TAGCTCATGTGTTTTAATTGAATGTGATGATAAT 363 Query 41990 TTAAAATCTATTAACAAAACTTCAGCATCAATTATTGAATATATTTCTAAACGAGCTGGT 42049 || | ||||||||| ||| | || ||| | ||||| ||||| ||||||| || Sbjct 362 CTAGATTCTATTAACGCTACTACTAGTTCTATTGTAAAATATGTTTCTCAACGAGCAGGA 303 Query 42050 ATCGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGGTGAAGTT 42109 || ||||| || | ||| | ||||||||| |||| | || | | || |||| Sbjct 302 ATTGGTATTAATGCTGGAAAAATTCGTGCAGTAGGTAGTCCTATTAGAAATGGCGAAGCA 243 Query 42110 CGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCT 42169 ||||| ||| |||||| || | |||||||| |||| ||| |||||||| |||||| Sbjct 242 TTTCATACTGGTTGTATTCCTTTTTATAAACATTTTCAAAGTGCTGTAAAATCCTGTTCT 183 Query 42170 CAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTA 42229 ||||| || || | ||||| || || || | |||||| || ||||| || ||| | Sbjct 182 CAAGGAGGAGTTAGAGGTGGAGCGGCAACTATATTTTATCCAATATGGCATTTTGAAATT 123 Query 42230 GAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAA 42273 || | |||||||| | |||||||| | ||| | || ||||| Sbjct 122 GAAAGTTTATTAGTTTTAAAAAATAATAGGGGCATTGAAGAAAA 79 >seq249645 Length=476466 Score = 111 bits (122), Expect = 2e-19 Identities = 299/450 (66%), Gaps = 8/450 (2%) Strand=Plus/Plus Query 41852 GACCGTTTGAAACATATTATTCGTTTTTATGATGCCGTTTCT--ACTCATCAAGTTTCAT 41909 ||||||||| | || | | || || |||||||| || | ||| || | ||| Sbjct 264499 GACCGTTTGCATTATGTCAAACGCTTCTATGATGCGACCTCAGAATTCA--AAATCTCAC 264556 Query 41910 TGCCAACCCCAATTATGGCAGGTGCTCGTACTCCGACTCGCCAGTTCT-CTAGTTGTGTA 41968 | ||||| ||||| ||| |||||| ||||| || | || ||||| || || | || Sbjct 264557 TACCAACGCCAATCATGTCAGGTGTGCGTACGCCATCGCGTCAGTTTAGCTCGT-GCGTC 264615 Query 41969 GTTATTGAAGCCGGTGATTCGTTAAAATCTATTAACAAAACTTC-AGCATCAATTATTGA 42027 | || ||| |||||| ||| | ||||| ||| || | ||| || | | Sbjct 264616 TTAATCGAATGTGGTGATAGCTTAGACTCTATCAACGCCACCACTAGCGCCA-TCGTACG 264674 Query 42028 ATATATTTCTAAACGAGCTGGTATCGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTC 42087 ||| | || | || ||||||||||| ||||||| ||| | ||||| ||| Sbjct 264675 CTATGTGTCACAGCGTGCTGGTATCGGCATCAACGCAGGTCGTATCCGTGCCCTTGGTAG 264734 Query 42088 TAAGATCGGTATGGGTGAAGTTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCA 42147 ||| || ||||||| | ||||| || |||||| || | ||| ||||| Sbjct 264735 CCCTATCCGTGGCGGTGAAGCACAGCATACTGGCTGTATTCCTTTTTATAAATTGTTCCA 264794 Query 42148 AACTGCAGTAAAATCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTA 42207 ||| || || |||| || || |||||||| | ||||| |||||||| || || || Sbjct 264795 AACGGCCGTTAAATGCTGCTCACAAGGTGGCGTACGTGGCGGTGCTGCGACGTTGTTCTA 264854 Query 42208 TCCGATGTGGCACTTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGA 42267 || | ||||| |||||||| ||| || | || || ||||||||| || || || Sbjct 264855 CCCACTATGGCATTTAGAAGTTGAGTCATTACTGGTACTCAAAAATAACCGCGGTGTTGA 264914 Query 42268 TGAAAACCGTATTCGACATATGGACTACGG 42297 || |||||| | || |||||||||||||| Sbjct 264915 AGACAACCGTGTCCGTCATATGGACTACGG 264944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538135614093280