Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_029121.1
Length=151417
Score E
Sequences producing significant alignments: (Bits) Value
seq81543 98.7 1e-15
seq149378 93.3 4e-14
>seq81543
Length=132751
Score = 98.7 bits (108), Expect = 1e-15
Identities = 141/198 (71%), Gaps = 3/198 (2%)
Strand=Plus/Minus
Query 125301 CGCCGACATATCGTCTCAGCTTGGAACGCAGGAGAAGTAGAACATGCTGCTTTACCCCCA 125360
|| || | |||||| || | ||||||| ||||||| | ||||| | || || || ||
Sbjct 70861 CGACGCCTTATCGTATCGGGTTGGAACCCAGGAGAGGCCGAACAAGTCGCCTTGCCGCCC 70802
Query 125361 TGCCACACAATGTTCCAGTTTTACGTAGGTAAAGACAACACGCTAAGCTGCAAGATGTAT 125420
||||| || | || ||||| | || | | ||||| | || ||| || | |||
Sbjct 70801 TGCCATACTCTATTTCAGTTCTTTGTCGCT---GACAATAAACTGTCATGCCAGCTATAT 70745
Query 125421 CAACGATCAGCAGACGTATTTTTAGGAGTACCATTCAATATCGCAAGCTACGCACTATTG 125480
|| || ||||| || |||| |||| || ||||||||||| ||||||||||| || |||
Sbjct 70744 CAGCGCTCAGCGGATTTATTCCTAGGTGTGCCATTCAATATTGCAAGCTACGCGCTCTTG 70685
Query 125481 ACTCACCTTATCGCAAAG 125498
|| ||| | ||||| ||
Sbjct 70684 ACCCACATGGTCGCACAG 70667
>seq149378
Length=35185
Score = 93.3 bits (102), Expect = 4e-14
Identities = 165/238 (69%), Gaps = 6/238 (3%)
Strand=Plus/Minus
Query 100856 TAAAGTCAGCTTGTACACCGATAGGCATGAACGCATCAGTAGCGATACCGTAACCTTTAC 100915
|||||||||| | ||||| |||||||| | |||||||| || | |||| |||||| ||
Sbjct 26299 TAAAGTCAGCCTTAACACCAATAGGCATATAAGCATCAGTTGCAACACCGAAACCTTCAC 26240
Query 100916 CAACGATAACAGATGCTTTGTTAAGGATTTGTTCAGTAAGTCCTTCGCCTCGAATGTCAA 100975
||| |||||| ||||||||||| | |||| || | | || | ||| || |||||
Sbjct 26239 CAATCTTAACAGCGGCTTTGTTAAGCACTTGTGGCGTTAATTCTCCACCTTCAAGGTCAA 26180
Query 100976 GAACGTTAGTCTTCTGATCAATAAGTTTGTGTAAACCGTCAAACTCTAGTCCTGCTTGGT 101035
|||| | ||||||||| || || || || ||||| || || || | |
Sbjct 26179 TGTGGTTA---TGAGCATCAATAAGCTTTTGCAAGCCATCAAATTCCAGACC--ATCGCC 26125
Query 101036 CGTCTAACTCGTTAGATAGAGCAGCGTCTCCGTAGAATGTAGCCCACTCAATAGTCTT 101093
| | | || | || || ||| ||| || ||||| ||||||| |||||||| ||
Sbjct 26124 CTTTTCAC-CAGCAGTTAAGTCAGAGTCACCATAGAAGATAGCCCATTCAATAGTTTT 26068
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482788313081760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |