Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_029121.1 Length=151417 Score E Sequences producing significant alignments: (Bits) Value seq81543 98.7 1e-15 seq149378 93.3 4e-14 >seq81543 Length=132751 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/198 (71%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 125301 CGCCGACATATCGTCTCAGCTTGGAACGCAGGAGAAGTAGAACATGCTGCTTTACCCCCA 125360 || || | |||||| || | ||||||| ||||||| | ||||| | || || || || Sbjct 70861 CGACGCCTTATCGTATCGGGTTGGAACCCAGGAGAGGCCGAACAAGTCGCCTTGCCGCCC 70802 Query 125361 TGCCACACAATGTTCCAGTTTTACGTAGGTAAAGACAACACGCTAAGCTGCAAGATGTAT 125420 ||||| || | || ||||| | || | | ||||| | || ||| || | ||| Sbjct 70801 TGCCATACTCTATTTCAGTTCTTTGTCGCT---GACAATAAACTGTCATGCCAGCTATAT 70745 Query 125421 CAACGATCAGCAGACGTATTTTTAGGAGTACCATTCAATATCGCAAGCTACGCACTATTG 125480 || || ||||| || |||| |||| || ||||||||||| ||||||||||| || ||| Sbjct 70744 CAGCGCTCAGCGGATTTATTCCTAGGTGTGCCATTCAATATTGCAAGCTACGCGCTCTTG 70685 Query 125481 ACTCACCTTATCGCAAAG 125498 || ||| | ||||| || Sbjct 70684 ACCCACATGGTCGCACAG 70667 >seq149378 Length=35185 Score = 93.3 bits (102), Expect = 4e-14 Identities = 165/238 (69%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 100856 TAAAGTCAGCTTGTACACCGATAGGCATGAACGCATCAGTAGCGATACCGTAACCTTTAC 100915 |||||||||| | ||||| |||||||| | |||||||| || | |||| |||||| || Sbjct 26299 TAAAGTCAGCCTTAACACCAATAGGCATATAAGCATCAGTTGCAACACCGAAACCTTCAC 26240 Query 100916 CAACGATAACAGATGCTTTGTTAAGGATTTGTTCAGTAAGTCCTTCGCCTCGAATGTCAA 100975 ||| |||||| ||||||||||| | |||| || | | || | ||| || ||||| Sbjct 26239 CAATCTTAACAGCGGCTTTGTTAAGCACTTGTGGCGTTAATTCTCCACCTTCAAGGTCAA 26180 Query 100976 GAACGTTAGTCTTCTGATCAATAAGTTTGTGTAAACCGTCAAACTCTAGTCCTGCTTGGT 101035 |||| | ||||||||| || || || || ||||| || || || | | Sbjct 26179 TGTGGTTA---TGAGCATCAATAAGCTTTTGCAAGCCATCAAATTCCAGACC--ATCGCC 26125 Query 101036 CGTCTAACTCGTTAGATAGAGCAGCGTCTCCGTAGAATGTAGCCCACTCAATAGTCTT 101093 | | | || | || || ||| ||| || ||||| ||||||| |||||||| || Sbjct 26124 CTTTTCAC-CAGCAGTTAAGTCAGAGTCACCATAGAAGATAGCCCATTCAATAGTTTT 26068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482788313081760