Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq125822 127 2e-24 >seq125822 Length=25115 Score = 127 bits (140), Expect = 2e-24 Identities = 156/210 (74%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 34576 GATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTC 34635 |||||| | || || |||||| || | ||||| || |||||||| || || |||| Sbjct 8125 GATGGCCTTGCCGCCCTGCCACCTGCTGTTTCAATTTTATGTCGCGAACGGAAAGTTGTC 8184 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 |||||||| || ||||| || | || | ||||| || || || || |||||| Sbjct 8185 GTGCCAGCTTTACCAACGGTCTGCCGATGTCTTTTTAGGTGTTCCATTTAATATTGCTTC 8244 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTC-GTGGGGTTG--GTTCCTGGGGAGCT 34752 ||||||| |||| ||| ||||||| ||||||||| || | ||| ||| ||||| | Sbjct 8245 TTACGCTTTGCTGACGCACATGATTGCTCATGTCTGTAAGCTTGAAGTT---GGGGATTT 8301 Query 34753 GGTGCATACGTTGGGGGATGCGCATATCTA 34782 ||||||||||| ||||||||||||||||| Sbjct 8302 CGTGCATACGTTAGGGGATGCGCATATCTA 8331 Score = 127 bits (140), Expect = 2e-24 Identities = 156/210 (74%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 6563 TAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAAC--CAACCCCAC-GACA 6619 ||||||||||||||||| ||||||||||| | ||||| ||| ||| | || |||| Sbjct 8331 TAGATATGCGCATCCCCTAACGTATGCACGAAATCCCC---AACTTCAAGCTTACAGACA 8275 Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 ||||| ||||||| ||| |||| ||||||| |||||| || || || || ||||| Sbjct 8274 TGAGCAATCATGTGCGTCAGCAAAGCGTAAGAAGCAATATTAAATGGAACACCTAAAAAG 8215 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 | || | || ||||| || |||||||| |||| || || |||||||| || ||||| Sbjct 8214 ACATCGGCAGACCGTTGGTAAAGCTGGCACGACAACTTTCCGTTCGCGACATAAAATTGA 8155 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATC 6769 | || |||||| || || | |||||| Sbjct 8154 AACAGCAGGTGGCAGGGCGGCAAGGCCATC 8125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446765046692160