Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq34509 132 4e-26 seq255492 118 9e-22 seq29837 86.0 5e-12 >seq34509 Length=4973 Score = 132 bits (146), Expect = 4e-26 Identities = 178/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 118480 TGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCT 118539 ||||| | || |||||| |||||||||| ||| || || |||||||| ||| | Sbjct 2551 TGATTTTTGTACACATGACCATCCCCAATAACATGGATAAAATCACCAGGAACAAGATCA 2492 Query 118540 GTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCC 118599 || |||||| | ||| | || | | | |||| || | ||||| || ||||| Sbjct 2491 CACACGTGAGCGAGTATGCAAGTAAGAAGAGAGTAGGACGCAATGTTAAACGGCACACCA 2432 Query 118600 AGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAA 118659 ||||||||||||||||| | ||| |||| ||| || ||||||||||||| ||| ||||| Sbjct 2431 AGACCCATGTCTGCTGAACGCTGATACATTTGACATGAGAGCTCCCCGTCTGCCACATAG 2372 Query 118660 AACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGTTGGGCAGGATTCCAG 118719 ||||| | ||||| |||||||| || |||| | | || | | ||||||||| Sbjct 2371 AACTGTGCAAACATGTGGCATGGAGGAAGTGCCATCAACTTAAGATCAGAAGGATTCCAA 2312 Query 118720 GCTGTTAA 118727 |||| ||| Sbjct 2311 GCTGATAA 2304 >seq255492 Length=11799 Score = 118 bits (130), Expect = 9e-22 Identities = 175/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 118480 TGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCT 118539 ||||| | || ||||||||||||||||| ||| | || |||||||| ||| | Sbjct 6451 TGATTTTTGTACACATGAGCATCCCCAATAACATGGGTAAAATCACCAGGAACAAGATCA 6510 Query 118540 GTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCC 118599 || |||||| | ||| | || | | | |||| || | ||||| || ||||| Sbjct 6511 CACACGTGAGCGAGTATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCA 6570 Query 118600 AGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAA 118659 ||||||||||| ||||| | ||| |||| ||| || ||||||||||| | ||| ||||| Sbjct 6571 AGACCCATGTCCGCTGAACGCTGATACATTTGACATGAGAGCTCCCCTTCTGCTACATAG 6630 Query 118660 AACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGTTGGGCAGGATTCCAG 118719 ||||| | ||||| |||||||| || |||| | | || | | ||||||||| Sbjct 6631 AACTGTGCAAACATGTGGCATGGAGGAAGCGCCATCAACTTAAGGTCAGAAGGATTCCAA 6690 Query 118720 GCTGTTAA 118727 || | ||| Sbjct 6691 GCCGATAA 6698 >seq29837 Length=4748 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 ||||| || || || ||||||||||| ||||| | ||| |||| |||||| || || || Sbjct 3534 TTAAATGGTACGCCAAGACCCATGTCGGCTGAGCGCTGATACATTTGGCATGAAAGTTCT 3593 Query 118645 CCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 || || |||||||||||||| | ||||| |||||||| || |||| Sbjct 3594 CCATTCGCAACATAAAACTGTGAAAACATGTGGCATGGAGGAAGTGCCAT 3643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413126914860592