Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq210337 109 4e-19 seq117562 93.3 3e-14 seq26661 91.5 1e-13 seq78792 89.7 4e-13 seq236154 84.2 2e-11 seq153189 82.4 5e-11 >seq210337 Length=1863 Score = 109 bits (120), Expect = 4e-19 Identities = 154/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || ||||| ||||||||| ||||| |||| || || ||| || Sbjct 1268 ATGCAAATCTTTGTCAAGACTCTCACTGGGAAAACCATTACTCTTGAGGTTGAGAGCTCC 1209 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| | ||| ||||| || || |||||||||||| | || ||| | Sbjct 1208 GATACGATCGATAAT--GTCAAGGCTAAGATCCAGGACAAAGAAGGTATCCCTCCGGATC 1151 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 |||| | | || |||||||| || ||| | || || | ||| | |||| | |||||| Sbjct 1150 AGCAGAGACTTATCTTTGCCGGTAAGCAACTTGAAGATGGACGTACTCTTG-CGGATTAC 1092 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||||||||||| |||| | || ||||| Sbjct 1091 AACATCCAAAAAGAGTCCACTCTACACTTGGT 1060 >seq117562 Length=2070 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || ||||||||||| ||||| || || || | || ||||| ||| | Sbjct 1003 ATGCAAATATTCGTGAAAACTCTCACTGGAAAGACCATAACTCTCGAGGTCGAGAGCTCT 1062 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || |||| ||||| ||| || ||||| ||||| |||| ||| | Sbjct 1063 GACACCATCGACAA--CGTCAAGGCAAAGATCCAGGACAAGGAAGGGATTCCTCCGGATC 1120 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || || || ||||| ||||| | || || | || | |||| | || || | Sbjct 1121 AGCAACGATTGATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCTGACTATA 1180 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| || ||||| |||||| | || ||| | || || Sbjct 1181 ACATCCAGAAGGAGTCGACCTTGCACTTGGTTCTCCGATTGAGAGGTGG 1229 >seq26661 Length=2801 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||||||||| || || || ||| || | || || ||||| | Sbjct 946 ATGCAGATCTTCGTGAAAACTCTCACCGGAAAGACTATCACCCTCGAGGTGGAAAGTTCT 1005 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| |||| || || ||| || ||||| |||||| |||| ||| | Sbjct 1006 GACACGATCGACAAC--GTTAAGGCAAAGATCCAGGACAAGGAAGGTATTCCTCCGGATC 1063 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| ||||| |||||||| || | || | |||| | ||||||| Sbjct 1064 AGCAGAGGCTTATCTTTGCTGGAAAGCAATTGGAAGATGGCCGTACCTTGGCGGATTACA 1123 Query 27968 ACATCCAAAAAGA 27980 |||||||||| || Sbjct 1124 ACATCCAAAAGGA 1136 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || || | || || || |||||| | || ||||| ||| | Sbjct 1630 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACTATTACCCTCGAGGTCGAGAGCTCA 1689 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | || || ||| |||||| ||||| |||||| | || ||| | Sbjct 1690 GACACCATTGATAAC--GTGAAAGCAAAAATCCAGGACAAGGAAGGTATCCCTCCGGACC 1747 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | || || || |||||||| ||| | || |||| || | | |||| |||| Sbjct 1748 AGCAGAGATTGATCTTCGCCGGAAAGCAACTTGAAGACGGTCGAACTCTAGCCGACTACA 1807 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| ||| | || ||||| |||||| | ||||| || Sbjct 1808 ACATCCAAAAGGAGTCAACTCTTCACTTGGTGTTGCGTCTTCGTGGTGG 1856 >seq78792 Length=14290 Score = 89.7 bits (98), Expect = 4e-13 Identities = 154/222 (69%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 27788 AAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCA 27847 ||||||| || || |||||||| || || ||||| || || | || || ||| Sbjct 11441 AAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAATCTT 11500 Query 27848 CCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905 | ||| || ||||| || ||| || || ||||| ||||| |||| ||| Sbjct 11501 CGGACACAATCGACAAT--GTGAAAGCGAAGATCCAAGACAAGGAAGGAATTCCACCGGA 11558 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 |||||||| || || |||||||||||||||||||| |||| | | | | ||||||| Sbjct 11559 CCAGCAACGTTTGATCTTTGCCGGAAAACAATTGGAAGACGGAAGAACACTCGCCGATTA 11618 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007 ||||||||| || || || | ||||| ||| |||| || Sbjct 11619 CAACATCCAGAAGGAATCGACGCTTCATTTAGTTCTGCGATT 11660 >seq236154 Length=204 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| | || || || ||||| || || ||||||||||| ||| | || Sbjct 168 GACAAAGAAGGTATCCCACCAGACCAACAACGTTTGATCTTTGCCGGAAAGCAACTTGAA 109 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| | ||||| ||||||||||| || || ||| | || ||||| ||| Sbjct 108 GACGGACGCACACTTTCCGACTACAACATCCAGAAGGAATCTACTCTTCACTTGGTGTTG 49 Query 28003 CGTTTGCGTGGCGG 28016 ||| | || || || Sbjct 48 CGTCTCCGAGGTGG 35 >seq153189 Length=17048 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || || ||||||||||| || || || |||| ||||| ||| | Sbjct 14737 ATGCAGATTTTCGTCAAGACTCTTACTGGCAAGACAATCACCCTTGAAGTCGAGAGCTCT 14796 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| || || ||||| ||||| | || ||| | Sbjct 14797 GACACCATTGACAAC--GTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCACCGGACC 14854 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 |||| || | || || || || ||||| | || || | |||| |||| | |||||| Sbjct 14855 AGCAGCGTCTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACACTTG-CGGATTAC 14913 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| ||||| ||| |||||||| ||||| || ||| | ||||| || Sbjct 14914 AACATTCAAAAGGAGTCAACTTTGCACTTGGTGTTACGTCTCCGTGGTGG 14963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354703412656356