Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq210337 109 4e-19
seq117562 93.3 3e-14
seq26661 91.5 1e-13
seq78792 89.7 4e-13
seq236154 84.2 2e-11
seq153189 82.4 5e-11
>seq210337
Length=1863
Score = 109 bits (120), Expect = 4e-19
Identities = 154/212 (73%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| ||||| || ||||| ||||||||| ||||| |||| || || ||| ||
Sbjct 1268 ATGCAAATCTTTGTCAAGACTCTCACTGGGAAAACCATTACTCTTGAGGTTGAGAGCTCC 1209
Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
|| |||| | ||| ||||| || || |||||||||||| | || ||| |
Sbjct 1208 GATACGATCGATAAT--GTCAAGGCTAAGATCCAGGACAAAGAAGGTATCCCTCCGGATC 1151
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966
|||| | | || |||||||| || ||| | || || | ||| | |||| | ||||||
Sbjct 1150 AGCAGAGACTTATCTTTGCCGGTAAGCAACTTGAAGATGGACGTACTCTTG-CGGATTAC 1092
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998
||||||||||||||| |||| | || |||||
Sbjct 1091 AACATCCAAAAAGAGTCCACTCTACACTTGGT 1060
>seq117562
Length=2070
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| || ||||||||||| ||||| || || || | || ||||| ||| |
Sbjct 1003 ATGCAAATATTCGTGAAAACTCTCACTGGAAAGACCATAACTCTCGAGGTCGAGAGCTCT 1062
Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
| || || |||| ||||| ||| || ||||| ||||| |||| ||| |
Sbjct 1063 GACACCATCGACAA--CGTCAAGGCAAAGATCCAGGACAAGGAAGGGATTCCTCCGGATC 1120
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
||||||| || || || ||||| ||||| | || || | || | |||| | || || |
Sbjct 1121 AGCAACGATTGATCTTCGCCGGTAAACAGCTAGAAGATGGCCGTACCTTGGCTGACTATA 1180
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||| || ||| || ||||| |||||| | || ||| | || ||
Sbjct 1181 ACATCCAGAAGGAGTCGACCTTGCACTTGGTTCTCCGATTGAGAGGTGG 1229
>seq26661
Length=2801
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/193 (71%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || || ||||||||||| || || || ||| || | || || ||||| |
Sbjct 946 ATGCAGATCTTCGTGAAAACTCTCACCGGAAAGACTATCACCCTCGAGGTGGAAAGTTCT 1005
Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| ||| |||| || || ||| || ||||| |||||| |||| ||| |
Sbjct 1006 GACACGATCGACAAC--GTTAAGGCAAAGATCCAGGACAAGGAAGGTATTCCTCCGGATC 1063
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| || | || ||||| ||||| |||||||| || | || | |||| | |||||||
Sbjct 1064 AGCAGAGGCTTATCTTTGCTGGAAAGCAATTGGAAGATGGCCGTACCTTGGCGGATTACA 1123
Query 27968 ACATCCAAAAAGA 27980
|||||||||| ||
Sbjct 1124 ACATCCAAAAGGA 1136
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || ||||| || || | || || || |||||| | || ||||| ||| |
Sbjct 1630 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACTATTACCCTCGAGGTCGAGAGCTCA 1689
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| || | || || ||| |||||| ||||| |||||| | || ||| |
Sbjct 1690 GACACCATTGATAAC--GTGAAAGCAAAAATCCAGGACAAGGAAGGTATCCCTCCGGACC 1747
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| | || || || |||||||| ||| | || |||| || | | |||| ||||
Sbjct 1748 AGCAGAGATTGATCTTCGCCGGAAAGCAACTTGAAGACGGTCGAACTCTAGCCGACTACA 1807
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||||||| ||| ||| | || ||||| |||||| | ||||| ||
Sbjct 1808 ACATCCAAAAGGAGTCAACTCTTCACTTGGTGTTGCGTCTTCGTGGTGG 1856
>seq78792
Length=14290
Score = 89.7 bits (98), Expect = 4e-13
Identities = 154/222 (69%), Gaps = 4/222 (2%)
Strand=Plus/Plus
Query 27788 AAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCA 27847
||||||| || || |||||||| || || ||||| || || | || || |||
Sbjct 11441 AAATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAATCTT 11500
Query 27848 CCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905
| ||| || ||||| || ||| || || ||||| ||||| |||| |||
Sbjct 11501 CGGACACAATCGACAAT--GTGAAAGCGAAGATCCAAGACAAGGAAGGAATTCCACCGGA 11558
Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965
|||||||| || || |||||||||||||||||||| |||| | | | | |||||||
Sbjct 11559 CCAGCAACGTTTGATCTTTGCCGGAAAACAATTGGAAGACGGAAGAACACTCGCCGATTA 11618
Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTT 28007
||||||||| || || || | ||||| ||| |||| ||
Sbjct 11619 CAACATCCAGAAGGAATCGACGCTTCATTTAGTTCTGCGATT 11660
>seq236154
Length=204
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|||||||||||| | || || || ||||| || || ||||||||||| ||| | ||
Sbjct 168 GACAAAGAAGGTATCCCACCAGACCAACAACGTTTGATCTTTGCCGGAAAGCAACTTGAA 109
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| ||||| | ||||| ||||||||||| || || ||| | || ||||| |||
Sbjct 108 GACGGACGCACACTTTCCGACTACAACATCCAGAAGGAATCTACTCTTCACTTGGTGTTG 49
Query 28003 CGTTTGCGTGGCGG 28016
||| | || || ||
Sbjct 48 CGTCTCCGAGGTGG 35
>seq153189
Length=17048
Score = 82.4 bits (90), Expect = 5e-11
Identities = 159/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| ||||| || || ||||||||||| || || || |||| ||||| ||| |
Sbjct 14737 ATGCAGATTTTCGTCAAGACTCTTACTGGCAAGACAATCACCCTTGAAGTCGAGAGCTCT 14796
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| || |||| ||||| || || ||||| ||||| | || ||| |
Sbjct 14797 GACACCATTGACAAC--GTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCACCGGACC 14854
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966
|||| || | || || || || ||||| | || || | |||| |||| | ||||||
Sbjct 14855 AGCAGCGTCTCATCTTCGCTGGTAAACAGCTCGAGGATGGTCGCACACTTG-CGGATTAC 14913
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||| ||||| ||| |||||||| ||||| || ||| | ||||| ||
Sbjct 14914 AACATTCAAAAGGAGTCAACTTTGCACTTGGTGTTACGTCTCCGTGGTGG 14963
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354703412656356
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |