Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq210337 98.7 9e-16
seq153189 95.1 1e-14
seq26661 87.8 2e-12
>seq210337
Length=1863
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117
|| ||||| | || | ||||| ||||| ||| ||||||||| || || ||||| |||
Sbjct 1042 CCACCTCTGAGACGAAGTACCAAGTGTAGAGTGGACTCTTTTTGGATGTTGTAATCCGCA 1101
Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177
|| || ||| | || ||||| || || || ||||| ||||| | |||||| || | ||
Sbjct 1102 AGAGTACGTCCATCTTCAAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGG 1161
Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237
| | ||||||||| ||| || |||| | | | ||||||| ||| ||
Sbjct 1162 ATACCTTCTTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTATCGGAGCTCTCAACC 1221
Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| | || || |||| || || || || || ||||||||||||||
Sbjct 1222 TCAAGAGTAATGGTTTTCCCAGTGAGAGTCTTGACAAAGATTTGCAT 1268
>seq153189
Length=17048
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/220 (71%), Gaps = 10/220 (5%)
Strand=Plus/Minus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
||||||||||| || | || ||| ||||| || || ||||| |||||||| || |
Sbjct 14723 CGTAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGCAAGTGTGCGACCA 14664
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTT 39188
|| || |||||||| || || || || ||||||||||||| ||||||| | || || ||
Sbjct 14663 TCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATCCCT-TCCTT 14605
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCG 39244
|||| ||| || |||| ||| | | | || || ||| |||||| || | |
Sbjct 14604 GTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCTGAGCT---CTCCACCTCGAGGG 14549
Query 39245 TGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| ||| | || || |||| ||||| || ||||| |||||
Sbjct 14548 TAATAGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCAT 14509
Score = 87.8 bits (96), Expect = 2e-12
Identities = 100/132 (76%), Gaps = 2/132 (2%)
Strand=Plus/Minus
Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129
||||||||||| || | || ||| ||||| || || ||||| |||||||| || |
Sbjct 14951 CGTAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGCAAGTGTGCGACCA 14892
Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTT 39188
|| || |||||||| || || || || ||||||||||||| ||||||| | || || ||
Sbjct 14891 TCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATCCCT-TCCTT 14833
Query 39189 GTCCATGATTTT 39200
|||| ||| ||
Sbjct 14832 GTCCTGGATCTT 14821
>seq26661
Length=2801
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
||||| || || || |||||| ||||| || ||||| || ||||| || | || ||
Sbjct 2294 ACCAAGTGGAGGGTCGACTCTTTCTGTATGTTGTAATCCGCCAGTGTGCGACCATCCTCG 2235
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCAT 39194
|||||||| || ||||| || ||||||||||||| ||||||| | || || ||||||
Sbjct 2234 AGCTGTTTACCAGCAAAGATGAGACGCTGCTGGTCCGGTGGGATCCCT-TCCTTGTCCTG 2176
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || |||| | | | || || ||| || |||| |||||| | ||
Sbjct 2175 GATCTTGGCCTTGACATTGTCAATTGTGTCAGAACTCTCGACTTCCAGGGTGATAGTCTT 2116
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| || || ||||| || || || |||||
Sbjct 2115 GCCGGTTAGGGTTTTCACGAATATCTGCAT 2086
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428146638171164
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |