Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq210337 98.7 9e-16 seq153189 95.1 1e-14 seq26661 87.8 2e-12 >seq210337 Length=1863 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | || | ||||| ||||| ||| ||||||||| || || ||||| ||| Sbjct 1042 CCACCTCTGAGACGAAGTACCAAGTGTAGAGTGGACTCTTTTTGGATGTTGTAATCCGCA 1101 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| | || ||||| || || || ||||| ||||| | |||||| || | || Sbjct 1102 AGAGTACGTCCATCTTCAAGTTGCTTACCGGCAAAGATAAGTCTCTGCTGATCCGGAGGG 1161 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||||||||| ||| || |||| | | | ||||||| ||| || Sbjct 1162 ATACCTTCTTTGTCCTGGATCTTAGCCTTGACATTATCGATCGTATCGGAGCTCTCAACC 1221 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | || || |||| || || || || || |||||||||||||| Sbjct 1222 TCAAGAGTAATGGTTTTCCCAGTGAGAGTCTTGACAAAGATTTGCAT 1268 >seq153189 Length=17048 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/220 (71%), Gaps = 10/220 (5%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 ||||||||||| || | || ||| ||||| || || ||||| |||||||| || | Sbjct 14723 CGTAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGCAAGTGTGCGACCA 14664 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTT 39188 || || |||||||| || || || || ||||||||||||| ||||||| | || || || Sbjct 14663 TCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATCCCT-TCCTT 14605 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCG 39244 |||| ||| || |||| ||| | | | || || ||| |||||| || | | Sbjct 14604 GTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCTGAGCT---CTCCACCTCGAGGG 14549 Query 39245 TGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||| | || || |||| ||||| || ||||| ||||| Sbjct 14548 TAATAGTCTTACCAGTCAAGGTTTTGACGAAGATCTGCAT 14509 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 ||||||||||| || | || ||| ||||| || || ||||| |||||||| || | Sbjct 14951 CGTAACACCAAGTGCAAAGTTGACTCCTTTTGAATGTTGTAATCCGCAAGTGTGCGACCA 14892 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTT 39188 || || |||||||| || || || || ||||||||||||| ||||||| | || || || Sbjct 14891 TCCTCGAGCTGTTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATCCCT-TCCTT 14833 Query 39189 GTCCATGATTTT 39200 |||| ||| || Sbjct 14832 GTCCTGGATCTT 14821 >seq26661 Length=2801 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || |||||| ||||| || ||||| || ||||| || | || || Sbjct 2294 ACCAAGTGGAGGGTCGACTCTTTCTGTATGTTGTAATCCGCCAGTGTGCGACCATCCTCG 2235 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || ||||| || ||||||||||||| ||||||| | || || |||||| Sbjct 2234 AGCTGTTTACCAGCAAAGATGAGACGCTGCTGGTCCGGTGGGATCCCT-TCCTTGTCCTG 2176 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || |||| | | | || || ||| || |||| |||||| | || Sbjct 2175 GATCTTGGCCTTGACATTGTCAATTGTGTCAGAACTCTCGACTTCCAGGGTGATAGTCTT 2116 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || ||||| || || || ||||| Sbjct 2115 GCCGGTTAGGGTTTTCACGAATATCTGCAT 2086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428146638171164