Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq146431 145 6e-30 >seq146431 Length=15796 Score = 145 bits (160), Expect = 6e-30 Identities = 416/624 (67%), Gaps = 13/624 (2%) Strand=Plus/Plus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 ||||| || |||||||| || ||||||||||||| |||| ||||||||| || ||| Sbjct 4125 AAACAAGCGAAATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAGGTT 4184 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 ||||| ||||| | || | || |||||||| || || | || || || ||| Sbjct 4185 AATCCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGCTACCTGAGAAG 4244 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCT 4724 || || ||||| || || || ||||| | ||| | || || | | | | Sbjct 4245 AAGATACCTTCAACACAAGCGAAAGCTACGATTCGTTCAGCAAA--AGTTTGAGATC-CA 4301 Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784 | ||||| | | ||||| | |||||| || ||| || |||||||| | | ||| Sbjct 4302 TCGATCCAAGTCATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTCGACTGCG 4361 Query 4785 TTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATAC 4844 |||| | | | | || |||| || ||||| || | || || |||||| Sbjct 4362 CGGAATAGATGATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAGACTATAC 4421 Query 4845 ATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAA-GCATCTAGCTTCTGT 4903 || |||||||| ||||| || || || || ||||||||||| || ||| | ||||| | Sbjct 4422 ATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCA-CGCGCTTCGGA 4480 Query 4904 TACTTGAACTTCGTTACAA-AATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGG 4962 ||||| || || | ||| |||| | | |||||| || || |||||| | Sbjct 4481 GACTTGTACATC-TGACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTCAGATG 4539 Query 4963 CTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGC-TTAAGTTTTTTC 5021 | || || || || | || || || |||| |||| || | | || || |||| | Sbjct 4540 CGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCC 4598 Query 5022 CAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCT 5081 |||| | |||| | || ||| |||||||| | ||||| || || ||||| ||| Sbjct 4599 CAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCT 4658 Query 5082 TTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACA-AATCTGTT-GT 5139 || |||||||| ||| || | || || |||||||||| || ||| ||||||| | Sbjct 4659 TTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACAT-ACAGAATCTGTCCGG 4717 Query 5140 CGTTAGGTGTAAGAAGCGGTTCTT 5163 ||| || ||||||||||| |||| Sbjct 4718 CGTC-GGAGTAAGAAGCGGCTCTT 4740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425658767246924