Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_030920.1 Length=165868 Score E Sequences producing significant alignments: (Bits) Value seq206067 345 4e-90 seq158858 304 1e-77 >seq206067 Length=18993 Score = 345 bits (382), Expect = 4e-90 Identities = 876/1328 (66%), Gaps = 18/1328 (1%) Strand=Plus/Plus Query 97009 CTGTTTACATACATTGGATTAATGACACTAGCAGATCGTTACTTAGCAACATCGCACGAC 97068 ||||| || ||||| ||| | |||| || |||| ||||||||||| |||| | Sbjct 11436 CTGTTCACGTACATCGGACTTCGGACATTATCAGACCGTTACTTAGCGCGCGATCACGTC 11495 Query 97069 AAGCGTGTATACGAATTACCACAAGAACGTTTCCTTGTTATCGCTATGACATTAATG-AG 97127 ||| | |||||| | || || || |||||| | | ||||| ||||| || ||| || Sbjct 11496 AAGAAATTGTACGAACTGCCGCAGGAGCGTTTCATGATCATCGCGATGACGTTGATGCAG 11555 Query 97128 CCAAGAGAAGAAAGAGAAACGTATCGAGCTAGTTAAAGAGTCATACTGGGCTCTATCAAG 97187 || || |||||| || ||||| || || ||||| || |||||||| || || | Sbjct 11556 ACA-GAACCGAAAGACCGTCGGATCGATCTCGTCAAAGAATCGTACTGGGCACTTTCGAA 11614 Query 97188 TTTATATATGACAGTAGCAACACCAACACTAGCCAATGCAGGTAAAAGCTACGGACAGCT 97247 | |||||||| || || ||||| ||| | | ||||| |||||| ||||| || || Sbjct 11615 CCTGTATATGACGGTTGCGACACCGACATTGTCGAATGCCGGTAAATCGTACGGTCAACT 11674 Query 97248 TTCTAGCTGCTTTATTGATACAATCGATGACAGCTTACGAGGTATCTACGATAGTAACAC 97307 || || || || ||||| |||||||| |||| || ||||| || || || Sbjct 11675 CTCGTCATGTTTCATCGATACGGTCGATGACTCACTACGGGGCATCTATGACTCGAATAC 11734 Query 97308 AGACCTTGCTATGTTAAGTAAGAATG--GTGGAGGCATCGGCGTGTATTTAGGCCACATC 97365 || | || | || || | || | | || || ||||| || || | || | ||| Sbjct 11735 GGATGTCGCGACCTT--GTCAAAAGGCGGCGGCGGAATCGGTGTCTACATGGGAAAAATC 11792 Query 97366 CGAAGCCGTGGTAGTGATATTAGAGGGTTTAAAGGTGTATCATCTGGTACAATCCCTTGG 97425 || || || || || | ||| || || ||||||||| ||| || |||||| Sbjct 11793 CGTTCGCGCGGATCAGACATCAAAGGATTCAAGGGTGTATCAAGCGGTGTCATTCCTTGG 11852 Query 97426 ATGAAACAATTAAATAACACAGCAGTATCTGTAGACCAACTAGGACAGCGACAAGGGGCT 97485 ||||| || || || || ||||| || || || || || || ||| ||||| | Sbjct 11853 ATGAAGCAGTTGAACAATACAGCGGTCAGCGTTGATCAGCTCGGCATGCGTCAAGGATCA 11912 Query 97486 ATTGCAGTATACCTAGACGTATGGCATAAAGACATCTTCTCATTCCTAGACGCACGTTTA 97545 || || || || || || | ||||| || || ||| || |||||| || || || Sbjct 11913 ATCGCCGTTTATCTGGATATCTGGCACAAGGATATCCTCGAATTCCTCGATGCGAAGTTG 11972 Query 97546 AACAACGGAGACGAGCGCCAACGTACACATGACCTATTTACGGGAGTTTGTTTACCGGAT 97605 || ||||| |||||||| || |||||||| |||| || || || | | |||||| Sbjct 11973 AATAACGGGGACGAGCGGTTGCGGACACATGATTTATTCACAGGCGTCAGCCTGCCGGAT 12032 Query 97606 TTATTCATGGAGAAAGTAGAAGCTCGAGAAGATTGGCACCTATTTGATCCTCACGAAGTA 97665 |||||| || || ||||| |||| || ||| | | |||||||| || ||| | Sbjct 12033 CATTTCATGCGGACCGTCGAAGCACGAGGCGACTGGTATTTGTTTGATCCACATGAAATC 12092 Query 97666 CGTACAGTGATGGGCTATTCTATTGAAGACTNNNNNNNNNNNNNNNNNNGTAGCGGCTCA 97725 || || |||||||||| | | ||||| | ||||| Sbjct 12093 CGGACGGTGATGGGCTTCAGTCTGGAAGATTCGTTTGATGAAACGGAGCAAGGCGGCAGC 12152 Query 97726 TTC-CGTACAAAATACGCAGAGTGTGTAGCAAATGAA----AACTTATCTCG-CGAAACA 97779 ||| || | ||||| | || ||||| |||||| || | | | |||| | Sbjct 12153 TTCACGGA-GAAATATGAAGCATGTGT---CAATGAACCCCGTCTGAGCCGGACGAA--A 12206 Query 97780 GTACCGGCTATCGAAATCTTTAAACGTATCATGATCTCTCAACTAGAGACAGGCACACCT 97839 |||||||| ||||| || | |||||| |||| || || || || || |||||||| Sbjct 12207 GTACCGGCCATCGATCTCGTCAAACGTTACATGCGGTCACAGCTCGAAACCGGCACACCG 12266 Query 97840 TACATGTTCTACCGTGATACAGTAAACCGTGCTAACCAAAACAAGCACGCGGGTATGATC 97899 |||||||||| ||| ||| | |||||||| || |||| |||||| || ||||| |||||| Sbjct 12267 TACATGTTCTTCCGCGATGCGGTAAACCGCGCCAACCCAAACAAACATGCGGGCATGATC 12326 Query 97900 TACTGTTCAAACCTTTGTGTAGAAATCACACAAAACCAAGGAACAACAGTCGTAACAGAG 97959 |||| || ||||| ||| |||||| | |||||| | | || || || || Sbjct 12327 TACTCGTCGAACCTCTGTTCAGAAATTATGCAAAACATGAGTCCGACGACAGTGACGGAA 12386 Query 97960 GAAATAACAGAAGACGGTAAGATCGTTATTACAAAAAGCCCTGGTGACTTTGTAGTATGT 98019 || || |||||||| |||||| | || || || | || || || || || || ||| Sbjct 12387 GAGTACACGGAAGACGGCAAGATCATCATCACGAAGACACCAGGCGATTTCGTCGTCTGT 12446 Query 98020 AACTTATCTTCTATTAACTTAGCTCGCGCTGTAACAGACGAAGTACTAGAGCGACTAATC 98079 ||||| ||||| || |||| || ||||| || || | || || | || Sbjct 12447 AACTTGTCTTCGATCGCACTAGCGCGTGCTGTTCGCTCGGATGTCTTGGAACGGTTGATT 12506 Query 98080 CCAATTCAAATTCGTATGTTAGACAACGTAATTGAGCTGAATGATATCCCTGTACTACAA 98139 || |||||||| || ||| | || ||||| || || || || || ||| | ||| Sbjct 12507 CCGATTCAAATGCGGATGCTCGATAACGTCATCGATCTCAACACGATTGATGTGCCGCAA 12566 Query 98140 GCTAAGTTATCTAACCAGAAATATCGTGCAGTCGGCTTAGGTACATTCGGATGGAACCAC 98199 || || | | ||||||||||| || ||||| || | || |||||||| ||| | ||| Sbjct 12567 GCACAGATCACGAACCAGAAATACCGGGCAGTTGGACTCGGGACATTCGGCTGGCATCAC 12626 Query 98200 TTACTAGCTCTTAAAAAGATTGCATGGGAAACAGACGAAGCAGTAGAGTATTGTGATAGC 98259 | || || || || || |||||| | | ||| || || |||| ||| | Sbjct 12627 CTGCTCGCACTCGAAGGCATCCGTTGGGAATCGGTCGAGGCTGTTCAGTACGCCGATCGT 12686 Query 98260 CTTTACGAAGATATTGCTTACTTAACAGTTCAAGCTTCTATGGAGCTTTCAAAAGAGAAA 98319 || |||||| | || || ||||| || || | || || ||| | || | ||||| ||| Sbjct 12687 CTCTACGAAAAAATCGCATACTTGACGATTGATGCATCAATGCAACTGGCGAAAGAAAAA 12746 Query 98320 GGTGCTTA 98327 || ||||| Sbjct 12747 GGGGCTTA 12754 >seq158858 Length=235449 Score = 304 bits (336), Expect = 1e-77 Identities = 496/704 (70%), Gaps = 8/704 (1%) Strand=Plus/Plus Query 126799 TTGGAGATCGTATGAAAGGGTATGAAAATGCATACCGTGCTTATTTACCTAAGAGAATGC 126858 |||||||||| ||||| | || || |||||||| || | | |||||| | ||||||| Sbjct 146996 TTGGAGATCGCATGAAGAGATACGAGAATGCATATCGCATTAAGTTACCTGAAAGAATGC 147055 Query 126859 CTGTTATTATTCGAATCGATGGGAAGGCA-TTCCACACGTATACAAAAGGAATGGAGAAA 126917 | || ||| | | || ||||| | || || || || ||||||||||| | || Sbjct 147056 CCGTGATTGTAAGGATTGATGG-AGCACACTTTCATACATATACAAAAGGTTGCGCTAAG 147114 Query 126918 CCATTCGACGCATGTT-TAACACATGTTATGTGGGAGACGTGTAAATACCTTCTACAGAA 126976 || || ||| || | | || || | | | ||||| || || |||||| | || || Sbjct 147115 CCTTTTGAC-CAGGATCTAGCAGAAGCATTTTGGGAAACATGCAAATACTTAGCTCAAAA 147173 Query 126977 CATTTCAGGAGCGAAGGTAGCTTACACTCAATCTGATGAGATCAGTATCCTTATCACTAA 127036 |||| || ||||| ||| |||| ||| || |||||||| ||||| ||||| || || Sbjct 147174 CATTATGGGCGCGAAATTAGTTTACCATCAGTCGGATGAGATTAGTATTCTTATTACGAA 147233 Query 127037 CTATGACAAGCTTACTACGGAGTCATGGTTTAACAATAACCTACAGAAGATGGTGTCGGT 127096 ||||||||||||||| || | || |||||| | |||||||| || ||||| | || || Sbjct 147234 CTATGACAAGCTTACAACTCAATCTTGGTTTGAAAATAACCTTCAAAAGATAGCTTCTGT 147293 Query 127097 AGCAGCTTCAATGGCTACAGCTAAATTTAACGAAGAGATCAGAGGGTACTACCCGGCTAA 127156 | ||||| ||||| || || || ||||| |||| || |||| | | || |||| || Sbjct 147294 TTCGGCTTCTATGGCAACTGCAAAGTTTAATGAAGTTATGAGAGAGAAATATCCGGACAA 147353 Query 127157 AGACCTTGCACTATTCGATGCTCGAGCCTATGTACTACCTCACGACGAAGTAAACAACTA 127216 | ||||| ||| |||| ||| || | ||| | || || || || || ||||| Sbjct 147354 ACCACTTGCTACATTTGATGGTCGCGCACAGGTATTGCCACAAGATGAGGTTGCAAACTA 147413 Query 127217 TTTCTGGTGGAGACAACAGGATGCTACGAAGAACAGTATCTCTATGGTCGCGCAGGCTAA 127276 |||| ||||||||||| |||||| | ||||| || ||||| ||||| || || ||||| Sbjct 147414 TTTCATTTGGAGACAACAAGATGCTTCAAAGAATAGCATCTCAATGGTTGCTCAAGCTAA 147473 Query 127277 CTTCTCTCACAAGTCTCTACAAGGGCTAAATGGGAGCCAGATGCAGGATAAACTAATGTT 127336 ||| | || ||| | ||||| || ||||| | | ||||||||||| ||||| Sbjct 147474 CTTTCCACATAAGCAATTGCAAGGCCTTAATGGTAAGGATATGCAGGATAAGTTAATGAC 147533 Query 127337 AGAGAAGAATATCAACTGGAACAACCTACACACTTGGCAGAAGCGTGGTGCATGTATCGT 127396 ||||| |||||||||||||| || ||| ||||| || |||||| ||| ||| | Sbjct 147534 TGAGAAAAATATCAACTGGAATGACTTACCTGTATGGCAAAAACGTGGTATATGCATCAT 147593 Query 127397 GAAAGATTGGTA-TAACAGAGGTGGTGCGGTACGTACACGATGGGTAGTAGA-CATGAAA 127454 ||||| | || || ||| |||||| || | | |||||| |||||| |||| || Sbjct 147594 TAAAGAGTTCTACGAAAAGA-ATGGTGCTTTAAGAAGTCGATGGTCAGTAGATCATG-AA 147651 Query 127455 ACACCGATCTTTTCTCAGGATAAAGATTATATTGAAAGATTTGT 127498 || || || ||||| | || || ||| ||||| ||| || Sbjct 147652 ACTCCTATTATTTCTAAAGACCGCGAATATGTTGAACAATTCGT 147695 Score = 109 bits (120), Expect = 6e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 138320 ATAAAGGCCATGATTGGGAAACATACGCAGTTAGTACCGGTTACTCGAGTAATGATATAG 138379 ||||||| ||||||||||| || ||| ||||| ||| ||||| | |||| |||| |||| Sbjct 110784 ATAAAGGTCATGATTGGGATACTTACACAGTTGTTACTGGTTATTGGAGTTATGACATAG 110843 Query 138380 AACAAGCGGGTTATTGCTTACGTTGCGGTTATGATACACATGGAGAGTAC 138429 ||||||| || ||||| | | || |||||||||||||||||||| ||| Sbjct 110844 AACAAGCTGGATATTGTACAAGATGTGGTTATGATACACATGGAGAATAC 110893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 528877044608640