Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_030925.1 Length=138081 Score E Sequences producing significant alignments: (Bits) Value seq45850 331 8e-86 seq144782 298 5e-76 seq255890 215 5e-51 seq182678 89.7 5e-13 >seq45850 Length=23888 Score = 331 bits (366), Expect = 8e-86 Identities = 433/597 (73%), Gaps = 2/597 (0%) Strand=Plus/Plus Query 37261 CCATCAGAAAGAATGGCAAAGTCAGTGATGCCTAAGTCTATACCAATAGATGATTCAGTT 37320 ||||| || | |||||| || || | | |||| ||||| ||||| | || | ||| Sbjct 407 CCATCTGACAAAATGGCGAAATCTTTTAGTCCTACATCTATCCCAATGTAAGAATGTGTT 466 Query 37321 TTCTCCAATGACTGTACTTCTATTTCTGCAAGAATCGATACAAAGTATTTACCACTAGGA 37380 ||| | | ||||||||| |||| | | | || ||||| ||| ||||| ||| Sbjct 467 TTCGGAAGTTCTTGTACTTCTGTTTCAACTAATAGTGACACAAAATATCTACCAGAAGGG 526 Query 37381 TTTCGTCTAACAGTAGCATTAAGGATACGACCATGTACTTCACGACTTTTGGCAAAGCGA 37440 |||||||||||||| ||||| | ||||| || | ||||||||||||||||| ||| ||| Sbjct 527 TTTCGTCTAACAGTCGCATTTACAATACGTCCCTCTACTTCACGACTTTTGGGAAATCGA 586 Query 37441 ACAAGACCAAGTTTCGGCAATTTGATTTTGCTGTCTACAATGGTAATGTTATTGTTTGTT 37500 ||||| || ||||| ||||| || |||||| | |||||| || ||| || | |||||| Sbjct 587 ACAAGGCCTAGTTTGGGCAACTTTATTTTGTTCCCTACAACGGCAATATTTTCATTTGTT 646 Query 37501 TCTTTAGTCGTGTAGGATTGTACCTTATTCTTTTTAGACTTGAAGCGTGGTGCTTTATTT 37560 | ||| || || || |||||||| |||||||| || || ||||| || || || ||||| Sbjct 647 TGTTTTGTGGTATAAGATTGTACGTTATTCTTCTTGGATTTGAAACGCGGGGCACTATTT 706 Query 37561 TGTTTCTTGAAGAATCGAGTATACGAATCAGCAAGGTTTTTCAGTGAAGATTGAAGGGCA 37620 ||||| ||||| ||||| ||||| | ||| |||||||| | || || |||| ||| Sbjct 707 TGTTTTTTGAAAAATCGTGTATATGCATCCGCAAGGTTGCGAACAGACGACTGAATCGCA 766 Query 37621 ATGCTATCAACTTCTTTTAGCCATACTAATTTCTTTTTTAGTTG-TGTTAATTCAGCAGA 37679 || ||||| |||||||| ||||| || || ||||| || | | | | || ||||| Sbjct 767 ATACTATCCACTTCTTTGAGCCAAACGAA-CTCTTTCTTCATGGCAGGAAGTTTGGCAGA 825 Query 37680 ACAAGAATTGTAAGTTAATCCTTTGCCAGTTTCTTTGTATGTATCGTTCCATTGCCCTAA 37739 || | | || ||||| ||||| ||||| |||||||||| | | |||| | || Sbjct 826 GCATGTACCATATGTTAAACCTTTTCCAGTCTCTTTGTATGCGTGATCCCATAGGGATAG 885 Query 37740 AAAGCGATTAAATACAAAACGACTACATCCGATTGTTTTAGCAATTAAGATTTCCTGTTC 37799 || |||| |||||||| ||| ||| || || ||||| ||||| ||| | ||| | Sbjct 886 GAAATGATTGAATACAAAGCGAGAACAACCTATCGTTTTGTTAATTAGAATTGCTTGTGC 945 Query 37800 TTTGGTTGGATAGATACGGAATTTGTATGCTTTGTTGACTAACATTGTTTACACCTC 37856 || ||||||||||||| || || || ||||| || | || |||| | |||||| Sbjct 946 TTGATTTGGATAGATACGAAACTTATAAGCTTTATTAATTATCATTTGATTCACCTC 1002 >seq144782 Length=84550 Score = 298 bits (330), Expect = 5e-76 Identities = 284/359 (79%), Gaps = 12/359 (3%) Strand=Plus/Plus Query 37747 TTAAATACAAAACGACTACATCCGATTGTTTTAGCAATTAAGATTTCCT-GTTCTTTGGT 37805 ||| | || ||||| ||| |||| |||||| || ||||| | || | ||| || Sbjct 10916 TTATACACGAAACGTACACAACCGAAGGTTTTACGTAT-AAGATGTGCTTGGTCTCCTGT 10974 Query 37806 TGGATAGATACGGAATTTGTATGCTTTGTTGACTAACATTGT-------TTACACCTCAC 37858 |||||| | ||||||||| |||||||| || || | |||| || ||||||| Sbjct 10975 TGGATACAAACGGAATTTATATGCTTTATT--CTG-CTTTGTCATATCATTTCACCTCAT 11031 Query 37859 TTTAGACCTTGATTTTCAATGTACTTTCTAACTACGTTGATTGGAGATCCGCCAGTAGTT 37918 ||| || |||||||||||| || || | ||||||| ||||| || || ||||||||| Sbjct 11032 TTTTCACTTTGATTTTCAATATATGTTTTTACTACGTCTATTGGCGAACCACCAGTAGTT 11091 Query 37919 AGTAAGCAAAAACTTCTCGACCAAAACATTTCTTTCCATAGCTTTTTTCTTATTTGTGGG 37978 ||||||||||| ||||| ||||||||||| |||||||| || || ||| | | |||||| Sbjct 11092 AGTAAGCAAAAGCTTCTTGACCAAAACATCTCTTTCCAAAGTTTCTTTTTCACTTGTGGA 11151 Query 37979 AAGTCGCGTTTTATCAGACGAGAACTTGCACTTTTATAAGCATTGATGAACTTTGACAAT 38038 ||||| | ||| || || |||||||||||||||||||||||||||||||| |||| || | Sbjct 11152 AAGTCTCTTTTAATAAGTCGAGAACTTGCACTTTTATAAGCATTGATGAATTTTGTCATT 11211 Query 38039 TCTGTATTAGGGTGTGCTTTGAACAAGATGTGAACATGGTCTTTATCATGATTCCATTC 38097 ||||||||||||||||| || ||||| || |||||||||||| ||||||||||||||| Sbjct 11212 TCTGTATTAGGGTGTGCCTTTAACAAAATATGAACATGGTCTACATCATGATTCCATTC 11270 >seq255890 Length=19928 Score = 215 bits (238), Expect = 5e-51 Identities = 391/576 (68%), Gaps = 32/576 (6%) Strand=Plus/Plus Query 37261 CCATCAGAAAGAATGGCAAAGTCAGTGATGCCTAAGTCTATACCAATAGATGATTCAGTT 37320 ||||| || | ||| || || || | | |||| ||||| ||||| | || | ||| Sbjct 407 CCATCTGACAAAATAGCGAAATCTTTTAGTCCTACATCTATTCCAATGTAAGAATGTGTT 466 Query 37321 TTCTCCAATGACTGTACTTCTATTTCTGCAAGAATCGATACAAAGTATTTACCACTAGGA 37380 ||| | | ||||||||| |||| | | | || ||||| ||| ||||| ||| Sbjct 467 TTCGGAAGTTTTTGTACTTCTGTTTCAACTAATAGTGACACAAAATATCTACCAGAAGGG 526 Query 37381 TTTCGTCTAACAGTAGCATTAAGGATACGACCATGTACTTCACGACTTTTGGCAAAGCGA 37440 || ||||||| |||||||| | ||||| || | |||||| ||||||||||||| ||| Sbjct 527 TTCTGTCTAACTGTAGCATTTACAATACGCCCCTCTACTTCGTGACTTTTGGCAAATCGA 586 Query 37441 ACAAGACCAAGTTTCGGCAATTTGATTTTGCTGTCTACAATGGTAATGTTATTGTTTGTT 37500 ||||| || ||||||||||| || |||||| | |||||| || ||| || | |||||| Sbjct 587 ACAAGGCCTAGTTTCGGCAACTTTATTTTGTTCCCTACAACGGCAATATTTTCATTTGTT 646 Query 37501 TCTTTAGTCGTGTAGGATTGTACCTTATTCTTTTTAGACTTGAAGCGTGGTGCTTTATTT 37560 | ||| || || || |||||||| || ||||| ||||| |||| Sbjct 647 TGTTTTGTGGTATAAGATTGTACGTTGTTCTTCTTAGA---------------TTTA--- 688 Query 37561 TGTTTCTTGAAGAATCGAGTATACGAATCAGCAAGGTTTTTCAGTGAAGATTGAAGGGCA 37620 || || ||||| | ||| |||||||| | || || |||| ||| Sbjct 689 ------------AAGCGCGTATAAGCATCCGCAAGGTTGCGAACAGACGACTGAATCGCA 736 Query 37621 ATGCTATCAACTTCTTTTAGCCATACTAATTTCTTTTTTAGTTG-TGTTAATTCAGCAGA 37679 || ||||| |||||||||||||| || || ||||| || | | | || || ||||| Sbjct 737 ATACTATCCACTTCTTTTAGCCAAAC-AAGCTCTTTCTTCATGGCAGGTAGTTTGGCAGA 795 Query 37680 ACAAGAATTGTAAGTTAATCCTTTGCCAGTTTCTTTGTATGTATCGTTCCATTGCCCTAA 37739 || | || || || ||||| || || |||||||||| | |||||| || Sbjct 796 GCATATACCATAGGTCAAGCCTTTTCCTGTCTCTTTGTATGCGTGATTCCATAAGGATAG 855 Query 37740 AAAGCGATTAAATACAAAACGACTACATCCGATTGTTTTAGCAATTAAGATTTCCTGTTC 37799 || |||| |||||||| ||| ||| || || ||||| |||| ||| | ||| | Sbjct 856 GAAATGATTGAATACAAAGCGAGAACACCCAATCGTTTTGTTGATTAGAATTGCTTGTGC 915 Query 37800 TTTGGTTGGATAGATACGGAATTTGTATGCTTTGTT 37835 || ||||||||||||| || || || ||||| || Sbjct 916 TTGATTTGGATAGATACGAAACTTATAGGCTTTATT 951 >seq182678 Length=1699 Score = 89.7 bits (98), Expect = 5e-13 Identities = 188/278 (68%), Gaps = 2/278 (1%) Strand=Plus/Minus Query 37558 TTTTGTTTCTTGAAGAATCGAGTATACGAATCAGCAAGGTTTTTCAGTGAAGAT-TGAAG 37616 || || ||||||||||| || | ||| ||||||||| | ||| | | ||| |||| Sbjct 1687 TTCTGCTTCTTGAAGAAGCGGTCAAACGCATCAGCAAGATGTTTGA-CGCTGATCTGAAC 1629 Query 37617 GGCAATGCTATCAACTTCTTTTAGCCATACTAATTTCTTTTTTAGTTGTGTTAATTCAGC 37676 | | ||||| ||||| || | ||| | || | || |||| | | ||| Sbjct 1628 AGAGGTACTATCCACTTCCTTCAACCAGTCGAACTCCTGCTTTAACAAAGGAATTTCTTT 1569 Query 37677 AGAACAAGAATTGTAAGTTAATCCTTTGCCAGTTTCTTTGTATGTATCGTTCCATTGCCC 37736 ||||||||| ||| | | |||||| ||||| ||||| | || | ||| | | | Sbjct 1568 GGAACAAGAACCGTAGGACAGTCCTTTTCCAGTGGTCTTGTACATTTCATCCCACTTCGC 1509 Query 37737 TAAAAAGCGATTAAATACAAAACGACTACATCCGATTGTTTTAGCAATTAAGATTTCCTG 37796 || ||| | || || | || || ||| ||||| || || ||||| | ||||||||| Sbjct 1508 CAAGAAGTGGTTGAAGATGAAGCGTGAACACCCGATCGTCTTCGCAATCAGGATTTCCTG 1449 Query 37797 TTCTTTGGTTGGATAGATACGGAATTTGTATGCTTTGT 37834 ||||| || || ||||| | ||||||||| || |||| Sbjct 1448 CTCTTTTGTGGGGTAGATTCTGAATTTGTAGGCCTTGT 1411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440255663186080