Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_030933.1 Length=133798 Score E Sequences producing significant alignments: (Bits) Value seq149378 127 2e-24 seq151743 84.2 2e-11 seq28016 84.2 2e-11 >seq149378 Length=35185 Score = 127 bits (140), Expect = 2e-24 Identities = 335/494 (68%), Gaps = 18/494 (4%) Strand=Plus/Plus Query 18802 CAAAAGACCGTTACAATGAAATACATTTCTGATACTAAAAATATGTCATTGGC-ATCTAG 18860 |||||||| | ||||||||| |||| ||||||||| | | |||||||| || | Sbjct 25945 CAAAAGACTATCTCAATGAAATTCATTGTTGATACTAAGCAAAGCTCATTGGCTATGCAA 26004 Query 18861 TTTAGTAAATAACATTGCTGACCCTGGTCAAATCTTG--ACTGAAGATGCTATCTCAGTT 18918 || ||| | |||| ||||||||| |||| | ||| | || || | | | Sbjct 26005 TTGGCTAAC-ACCATTACTGACCCTGTTCAAGTTTTGGAAATG--GACGGCGTGGAAAAC 26061 Query 18919 GTTGCTAAAACAATTGAATGGGCTTCATTCTATGGTGATGCTTCATTAACTTCTGAAGTT 18978 |||| ||||| |||||||||||| ||||||||||| || |||||| ||| | Sbjct 26062 GTTGTCAAAACTATTGAATGGGCTATCTTCTATGGTGACTCTGACTTAACTGCTGGTGAA 26121 Query 18979 GGTGGAGAAGGACTAGAATTTGATGGACTAGCTAAA-TTAATTGATGCTGATAACGTTAT 19037 || || || || ||||||||||| || || ||| | ||||||||| ||||| || Sbjct 26122 AAGGGCGATGGTCTGGAATTTGATGG-CTTGCAAAAGCTTATTGATGCTCATAACCACAT 26180 Query 19038 CGACGCTAAAGGTGCTCACTTAGATGAGA-AATTATTAAACTTAGCTTCAGTTAAAATCG 19096 ||| | |||||| | ||| | | | || | | ||| ||| | ||||| || | Sbjct 26181 TGACCTTGAAGGTGGAGAATTA-ACGCCACAAGTGCTTAACAAAGCCGCTGTTAAGATTG 26239 Query 19097 GTAAAGGTTTTGGTACAGCTACAGATGCTTACATGCCTATCGGTGTACATTCTGACTTTG 19156 || ||||||| ||| || || |||||||| |||||||| ||||| | |||||||| Sbjct 26240 GTGAAGGTTTCGGTGTTGCAACTGATGCTTATATGCCTATTGGTGTTAAGGCTGACTTTA 26299 Query 19157 T-TACTAATATCTTAGGTCGACAA-ATGCAATTAATGCAAGACAA--TAGTGGTAATGTA 19212 | || || | ||||||| |||| | || | | | ||| | ||||| ||| | Sbjct 26300 TCAACCAACA-CTTAGGTGCACAACGTATTATGCTTCCCGGTCAAACTGGTGGT-ATGGA 26357 Query 19213 AATACTGGTTTCAGTGTTAACGGATTCTATTCATCTCGTGGATTCATTAGATTACATGGT 19272 | |||||||| || || | |||| ||| | ||||| ||||| || |||||| Sbjct 26358 A--ACTGGTTTAGACATTGACCGTTTCTTATCAGCACGTGGTAACATTAAGTTGCATGGT 26415 Query 19273 TCTACTGTAATGGA 19286 || ||| | ||||| Sbjct 26416 TCAACTATTATGGA 26429 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 4780 TAACGACTAAATTTCTAGGTAGTTATCTAAATGGAGATAGTGAGAACTAGATAAGAAAAC 4839 ||||||||||| || |||||| ||| |||||| |||| |||||| |||||||| | Sbjct 19689 TAACGACTAAACTTAGAGGTAGCTATTAAAATGGTAATAGCAAGAACTCTATAAGAAATC 19748 Query 4840 TCTTTATAGAGAAGTAAAGCAGAGAACCCTTAACCAAAACTAAGGGCTATAATATAGTCT 4899 || | || | ||||| |||||| | ||| || ||||||| | || || |||||| Sbjct 19749 CCTATTAAGGGGAGTAATGCAGAGGCTCATTATCCTAAACTAATGAGCATGATTTAGTCT 19808 Query 4900 AAACCCTTAATAAATA 4915 || |||| ||||||| Sbjct 19809 AATCCCTATATAAATA 19824 >seq151743 Length=442 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/100 (79%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 4779 CTAACGACTAAATTTCTAGGTAGTTATCTAAATGGAGATAGTGAGAACTAGATAAGAAAA 4838 ||||||||||||||||| ||||| | |||||| |||||||||| ||||||||||| Sbjct 343 CTAACGACTAAATTTCTGGGTAGCTGGTAAAATGGTACTAGTGAGAACCAGATAAGAAAA 402 Query 4839 CTCT--TTATAGAGAAGTAAAGCAGAGAACCCTTAACCAA 4876 | || | | || |||||||||||||| || |||||| Sbjct 403 CCCTGGTAACAGGGAAGTAAAGCAGAGGGACCACAACCAA 442 >seq28016 Length=334 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18906 TGCTATCTCAGTTGTTGCTAAAACAATTGAATGGGCTTCATTCTATGGTGATGCTTCATT 18965 ||||||||| | ||||| ||| ||| |||||||||| ||||||||||||||| || Sbjct 160 TGCTATCTCTGCTGTTGTTAAGACAGATGAATGGGCTATGTTCTATGGTGATGCTGACTT 219 Query 18966 AACTTCTGAAGTTGGTGGAGAAGGACTAGAATTTGATGGACTAGCTAAATTAATTGATGC 19025 |||||| | | || ||||||||| |||| ||||| ||| || | ||||| | Sbjct 220 AACTTCCGGTCAAGAAGGCGAAGGACTACAATTCGATGGTCTATTCAAGCTTATTGACCC 279 Query 19026 TGATAACGTTATCGAC 19041 || |||| ||| ||| Sbjct 280 TGCTAACCATATTGAC 295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426634778147972