Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_030953.1
Length=170650
Score E
Sequences producing significant alignments: (Bits) Value
seq26767 219 5e-52
seq249645 122 9e-23
seq127984 86.0 7e-12
>seq26767
Length=1149
Score = 219 bits (242), Expect = 5e-52
Identities = 323/453 (71%), Gaps = 12/453 (3%)
Strand=Plus/Plus
Query 88492 CATCAAATCATTCAGTTGAACGCCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 88551
|||||| | ||| | ||| || ||||||| | ||||| | | |||||||| | |||
Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92
Query 88552 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 88611
| |||||||| ||||| | | | |||||| ||| |||||||| || |||||| |
Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152
Query 88612 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 88671
||| || || || || | || ||| || || ||||| ||||| || ||| | ||||||||
Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 212
Query 88672 TTTCCAAAAAGGAATAACACCAGTATGACGTACTTCACCCATGCCAATCTTAGAACCTTC 88731
||| ||||||||||| |||||||||| | |||| || | | ||| | |||| |
Sbjct 213 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 272
Query 88732 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATACTCAACAAT 88791
|||||||| | ||| | |||||||||||||| || |||| || | ||| | |||||
Sbjct 273 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 332
Query 88792 TGA---AGCAGAAGCCTTATTGATAGACTTTA-ATGA--ATCACCTGCCTCAATAACAAC 88845
|| || || ||| ||| ||||| | || || | ||||| | ||||| | |||
Sbjct 333 AGAACTAGTAGTAGCGTTA---ATAGAATCTAGATTATCATCACAT---TCAATTAAAAC 386
Query 88846 GCATGAACTAAACTGTCGAGTTGGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGA 88905
||||| ||||| |||||||| ||||| | | |||| |||||| || || || || ||
Sbjct 387 ACATGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGA 446
Query 88906 AATCTGTCGAGTAGATACTGCTTCATAAAAACG 88938
||| | ||| || | || | |||||||||
Sbjct 447 AATTTTGAAAGTTGAAATGGCATTATAAAAACG 479
>seq249645
Length=476466
Score = 122 bits (134), Expect = 9e-23
Identities = 270/404 (67%), Gaps = 6/404 (1%)
Strand=Plus/Minus
Query 88508 TGAACGCCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 88567
|| ||||| || ||||||||||| | ||||| ||||| || || ||||||||| |
Sbjct 264950 TGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGT 264891
Query 88568 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 88627
|| || | |||||||| |||||||| | || || | || ||||| ||||||
Sbjct 264890 ACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCA 264831
Query 88628 CGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAATA 88687
|| | ||||| ||||| || ||||||| || || || || ||| |||||||||||
Sbjct 264830 CGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAATA 264771
Query 88688 ACACCAGTATGACGTACTTCACCCATGCCAATCTTAG---AACCTTCGGCACGAATCATA 88744
|||||||| || ||||||| |||| ||| ||| |||||| || |
Sbjct 264770 CAGCCAGTATGCTGTGCTTCACC---GCCACGGATAGGGCTACCAAGGGCACGGATACGA 264714
Query 88745 CCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATACTCAACAATTGAAGCAGAAGCC 88804
|| |||| || || || ||||| || | || | ||| || || | || |
Sbjct 264713 CCTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGTGGTG 264654
Query 88805 TTATTGATAGACTTTAATGAATCACCTGCCTCAATAACAACGCATGAACTAAACTGTCGA 88864
|||||||| | ||| |||||| || || | ||||| || |||||||| ||
Sbjct 264653 GCGTTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCTAAACTGACGC 264594
Query 88865 GTTGGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGAAAT 88908
| ||| ||||| ||| | ||| || || ||||| | ||| ||
Sbjct 264593 GATGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGAT 264550
Score = 84.2 bits (92), Expect = 2e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 87551 TCAATATTGGGCACGACTTGATTAAAGGAGCCCTCTTTTGATTCTTTAACAGAGACTGGT 87610
||||| | ||||||||||| || ||| ||| ||||||||| |||| | |||||| |
Sbjct 265916 TCAATCTCAGGCACGACTTGCTTTAAGATGCCATCTTTTGATGCTTTGATAGAGACCAGA 265857
Query 87611 CCACGTGGAGGCTCGATACCGTTTGT 87636
|||||||| |||||||||||||| ||
Sbjct 265856 CCACGTGGTGGCTCGATACCGTTGGT 265831
>seq127984
Length=21361
Score = 86.0 bits (94), Expect = 7e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 17184 TAAATTTGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAAT 17243
|||||| |||||| | | ||||||||||||| ||||||||| ||||||| ||||||| |
Sbjct 19915 TAAATTGGAGCGGGTGAAGAGAATCGAACTCTCATCATCAGCTTGGAAGGCTGAGGTTTT 19856
Query 17244 ACCATTATACGATATCCGCAAA 17265
|||| || || | | |||||||
Sbjct 19855 ACCACTAAACTACACCCGCAAA 19834
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 544128329236800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |