Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_031006.1 Length=161552 Score E Sequences producing significant alignments: (Bits) Value seq149378 122 9e-23 seq158858 87.8 2e-12 >seq149378 Length=35185 Score = 122 bits (134), Expect = 9e-23 Identities = 281/418 (67%), Gaps = 8/418 (2%) Strand=Plus/Plus Query 45985 ATGGCAAGTTTAGCTAACCAAACTGTCCAATCCGCAAATACCGTCT--ACTTCATGATTA 46042 ||||||| | || || ||||| || || ||| || |||| | | ||||||||| Sbjct 32791 ATGGCAACACTTGCAAAGCAAACGGTTGAAACCGGTAA--CCGTATTTATATCATGATTA 32848 Query 46043 AGAACGTACCAATCGCTCGTGCACAGTCAATCAGTTCAGAGCGTTCATTCGGTACAACTG 46102 |||||| | || | |||||| || ||| | | | || || ||||||||||| | Sbjct 32849 AGAACGAAGTTATTGGTCGTGCTCAATCATTAACTGGTGACCGCTCATTCGGTACCCAAG 32908 Query 46103 GTGTTTACGAGATTGGTTCTATCATGCCGAAAGAGCACGTTTACTTACGATATGAAGGTA 46162 |||| || || ||||||| |||||||| | || ||||| | |||| ||| |||| Sbjct 32909 GTGTGTATGAACTTGGTTCAATCATGCCACATGAACACGTATTCTTAAAGTATACGGGTA 32968 Query 46163 CTGTAACAGTTGACCGTTTCCGTATGCGTAAGGAGAACTTAGCTGCATTAG--GTTTCGC 46220 | ||| ||||||| |||| || | |||| | || | ||| || || | || | Sbjct 32969 CGGTATCAGTTGAACGTTATCGGTTACGTACTGGTAATATGTCTG-ATAAGAAGATT-AC 33026 Query 46221 CGCTCTTGGTGAAGAAGTATTACAAATGGATATCATGGACATCGTTCTATATGATAACAT 46280 ||||| |||||||| || || | || |||||| | || || | | | |||||| Sbjct 33027 TGCTCTAGGTGAAGATGTTTTGAAGATTGATATCTTAGATATTAATGTTAAGGATAACCA 33086 Query 46281 TACCTCTGAGGTAGTAATCGCATATCGTGGTTGCTCAATCGATACGTACTCAGAAACAGT 46340 || || || | ||| |||||||| |||||||| | || ||||||||||| Sbjct 33087 AACTGGTGCCTTAATCATCTGCTATCGTGGATGCTCAATTAACACCTACTCAGAAACTTA 33146 Query 46341 TTCTGTTGGTGAAATCTCAAGTGAGTCTGCAAGATTCTACTTCTTGACTTCAGCTAAC 46398 | | | || || | |||| |||||| |||||||| |||||||||| |||| Sbjct 33147 TCGGGCTAACGATATTACTGGTGAATCTGCACAATTCTACTACTTGACTTCAAGTAAC 33204 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 35727 CTGGTGTGAATGGTGCTTGGAAGATTCCAGTTGTATCTGCTGAAGATGTAAACTTCATCA 35786 ||||| ||||||| ||||||||| ||||| | | || | | |||||| || || | | Sbjct 23102 CTGGTATGAATGGCGCTTGGAAGGTTCCAATGATTTCAGGTCAAGATGCTAAGTTTGTTA 23161 Query 35787 ATATGACTCAGTCGTCTAAAGATATGGAATTCGAAAGATGGTTAAACTACCTTATCAACG 35846 | ||||| ||| | ||| ||||||||||| |||| | || |||||||| || | | Sbjct 23162 ACATGACACAGACTAGTAAGGATATGGAATTTGAAAAGTTTTTGAACTACCTAATTTATG 23221 Query 35847 TTATGTGTAGTATTTTTGC-AATCGACCCATCTGAGATTAACTTCCCTAACCGAGGCGGT 35905 |||| || | ||| | ||| | ||| || |||||||| ||||| || || || Sbjct 23222 TTAT-TGCTGCCGTTTACCAAATTCAGCCAGAAGAAATTAACTTTCCTAATCGTGGGGGA 23280 Query 35906 GCTACAGGG 35914 ||||| ||| Sbjct 23281 GCTACTGGG 23289 >seq158858 Length=235449 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 27256 GAGTAACAGATTTCAACACCGATAGAGTTACGGTTACCTGCACCATTACCATCTCCTGCG 27315 |||||||||||||||||||||||||| || ||||| || |||| |||||| || Sbjct 160265 GAGTAACAGATTTCAACACCGATAGATTTTCGGTTTCCGTTACCACCACCATCACCACAA 160206 Query 27316 TGCCACGCGTTACGGTTAAATGGAACTACTTGTTGAACTTCGAAATCATCGACTGC 27371 ||||| || ||||| | || |||| |||| |||||||| |||||| ||||| Sbjct 160205 TGCCAAGCATTACGATCAACCGGAATACCTTGAATAACTTCGATATCATCTACTGC 160150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515111978850560