Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_031006.1
Length=161552
Score E
Sequences producing significant alignments: (Bits) Value
seq149378 122 9e-23
seq158858 87.8 2e-12
>seq149378
Length=35185
Score = 122 bits (134), Expect = 9e-23
Identities = 281/418 (67%), Gaps = 8/418 (2%)
Strand=Plus/Plus
Query 45985 ATGGCAAGTTTAGCTAACCAAACTGTCCAATCCGCAAATACCGTCT--ACTTCATGATTA 46042
||||||| | || || ||||| || || ||| || |||| | | |||||||||
Sbjct 32791 ATGGCAACACTTGCAAAGCAAACGGTTGAAACCGGTAA--CCGTATTTATATCATGATTA 32848
Query 46043 AGAACGTACCAATCGCTCGTGCACAGTCAATCAGTTCAGAGCGTTCATTCGGTACAACTG 46102
|||||| | || | |||||| || ||| | | | || || ||||||||||| |
Sbjct 32849 AGAACGAAGTTATTGGTCGTGCTCAATCATTAACTGGTGACCGCTCATTCGGTACCCAAG 32908
Query 46103 GTGTTTACGAGATTGGTTCTATCATGCCGAAAGAGCACGTTTACTTACGATATGAAGGTA 46162
|||| || || ||||||| |||||||| | || ||||| | |||| ||| ||||
Sbjct 32909 GTGTGTATGAACTTGGTTCAATCATGCCACATGAACACGTATTCTTAAAGTATACGGGTA 32968
Query 46163 CTGTAACAGTTGACCGTTTCCGTATGCGTAAGGAGAACTTAGCTGCATTAG--GTTTCGC 46220
| ||| ||||||| |||| || | |||| | || | ||| || || | || |
Sbjct 32969 CGGTATCAGTTGAACGTTATCGGTTACGTACTGGTAATATGTCTG-ATAAGAAGATT-AC 33026
Query 46221 CGCTCTTGGTGAAGAAGTATTACAAATGGATATCATGGACATCGTTCTATATGATAACAT 46280
||||| |||||||| || || | || |||||| | || || | | | ||||||
Sbjct 33027 TGCTCTAGGTGAAGATGTTTTGAAGATTGATATCTTAGATATTAATGTTAAGGATAACCA 33086
Query 46281 TACCTCTGAGGTAGTAATCGCATATCGTGGTTGCTCAATCGATACGTACTCAGAAACAGT 46340
|| || || | ||| |||||||| |||||||| | || |||||||||||
Sbjct 33087 AACTGGTGCCTTAATCATCTGCTATCGTGGATGCTCAATTAACACCTACTCAGAAACTTA 33146
Query 46341 TTCTGTTGGTGAAATCTCAAGTGAGTCTGCAAGATTCTACTTCTTGACTTCAGCTAAC 46398
| | | || || | |||| |||||| |||||||| |||||||||| ||||
Sbjct 33147 TCGGGCTAACGATATTACTGGTGAATCTGCACAATTCTACTACTTGACTTCAAGTAAC 33204
Score = 86.0 bits (94), Expect = 6e-12
Identities = 134/189 (71%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 35727 CTGGTGTGAATGGTGCTTGGAAGATTCCAGTTGTATCTGCTGAAGATGTAAACTTCATCA 35786
||||| ||||||| ||||||||| ||||| | | || | | |||||| || || | |
Sbjct 23102 CTGGTATGAATGGCGCTTGGAAGGTTCCAATGATTTCAGGTCAAGATGCTAAGTTTGTTA 23161
Query 35787 ATATGACTCAGTCGTCTAAAGATATGGAATTCGAAAGATGGTTAAACTACCTTATCAACG 35846
| ||||| ||| | ||| ||||||||||| |||| | || |||||||| || | |
Sbjct 23162 ACATGACACAGACTAGTAAGGATATGGAATTTGAAAAGTTTTTGAACTACCTAATTTATG 23221
Query 35847 TTATGTGTAGTATTTTTGC-AATCGACCCATCTGAGATTAACTTCCCTAACCGAGGCGGT 35905
|||| || | ||| | ||| | ||| || |||||||| ||||| || || ||
Sbjct 23222 TTAT-TGCTGCCGTTTACCAAATTCAGCCAGAAGAAATTAACTTTCCTAATCGTGGGGGA 23280
Query 35906 GCTACAGGG 35914
||||| |||
Sbjct 23281 GCTACTGGG 23289
>seq158858
Length=235449
Score = 87.8 bits (96), Expect = 2e-12
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 27256 GAGTAACAGATTTCAACACCGATAGAGTTACGGTTACCTGCACCATTACCATCTCCTGCG 27315
|||||||||||||||||||||||||| || ||||| || |||| |||||| ||
Sbjct 160265 GAGTAACAGATTTCAACACCGATAGATTTTCGGTTTCCGTTACCACCACCATCACCACAA 160206
Query 27316 TGCCACGCGTTACGGTTAAATGGAACTACTTGTTGAACTTCGAAATCATCGACTGC 27371
||||| || ||||| | || |||| |||| |||||||| |||||| |||||
Sbjct 160205 TGCCAAGCATTACGATCAACCGGAATACCTTGAATAACTTCGATATCATCTACTGC 160150
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515111978850560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |