Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_031007.1
Length=223935
Score E
Sequences producing significant alignments: (Bits) Value
seq125822 93.3 6e-14
>seq125822
Length=25115
Score = 93.3 bits (102), Expect = 6e-14
Identities = 173/250 (69%), Gaps = 8/250 (3%)
Strand=Plus/Plus
Query 99201 AAGACCGTACGGGAACCGGTAC--CCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCT 99258
||||||| ||||||||||| || || | ||| || || || |||||||| ||| | |
Sbjct 7761 AAGACCGCACGGGAACCGGAACGACCAG--TATCTTTGGTCATCAGATGCGGTTCCCTTT 7818
Query 99259 GCAAGAAGGCTTTCCGCTGGTAACGACTAAGCGCTGTCACATGCGTTCGATTATTCACGA 99318
||| || || |||||| |||| ||||| || | || ||| |||||||| || ||
Sbjct 7819 GCAGGATGGATTTCCGATGGTGACGACGAAAAAATTACATATGAAGTCGATTATCCATGA 7878
Query 99319 ACTGCTGTGGTTCCTGAAAGGCGATACCA--ATGTCAAATATTTAAATGATAATGGTGTA 99376
|| | ||||| | || || |||| || ||| || || || || || || ||
Sbjct 7879 GTTGATTTGGTTTATCTCGGGTGACACCAACATTTCATATCTTCAA--GAAAACGGCGTC 7936
Query 99377 ACTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAG 99436
|||||| |||| ||| | || |||| || | ||||||||||| || || |||
Sbjct 7937 CGGATTTGGAACGAGTGGGCGGACGAAGACGGGAATCTCGGACCGGTTTATGGCGCCCAG 7996
Query 99437 TGGCGGTCTT 99446
||||| ||||
Sbjct 7997 TGGCGTTCTT 8006
Score = 89.7 bits (98), Expect = 7e-13
Identities = 78/97 (80%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 99852 AGTTATCGTGTCAGCTTTATCAACGCAGCGCCGATGTGTTCTTAGGGGTGCCGTTTAATA 99911
|||| ||||| |||||||| ||||| |||||||| || ||||| || || |||||||
Sbjct 8178 AGTTGTCGTGCCAGCTTTACCAACGGTCTGCCGATGTCTTTTTAGGTGTTCCATTTAATA 8237
Query 99912 TTGCGTCATACGCTTTGTTGATCCACATGTTTGCACA 99948
|||| || ||||||||| ||| |||||| |||| ||
Sbjct 8238 TTGCTTCTTACGCTTTGCTGACGCACATGATTGCTCA 8274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 714070759477600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |