Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_031020.1 Length=163201 Score E Sequences producing significant alignments: (Bits) Value seq48658 111 2e-19 seq244327 95.1 1e-14 seq249645 82.4 8e-11 >seq48658 Length=532 Score = 111 bits (122), Expect = 2e-19 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 66412 CTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCT 66471 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 297 CTACAGGATTTGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAACTGAGCT 356 Query 66472 AAGAGTGCATTAAT 66485 |||| |||| ||| Sbjct 357 AAGAACGCATAAAT 370 >seq244327 Length=1302 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 137299 ATAATATGAGTATAAGAACGAGAATGAATTGTTTCGCTGAATGTCCATGTTTGAACCCAT 137358 |||||||||||||||||||| || ||||| ||||| || | |||||||| || ||| Sbjct 846 ATAATATGAGTATAAGAACGTGAGTGAATAGTTTCCGAAAAAGACCATGTTTCAATCCAG 905 Query 137359 GTTTC-AAAGCCGACATCAGAGATCAACGGCGCAAATGCCAGAGCTGGAGCTCGTCCTTG 137417 ||||| || ||| || ||| || | || ||| || | ||| || |||||| Sbjct 906 GTTTCTAATTCCGGAAT-AGAAATAATTGGTAGAAAAGCAATGTTAGGACTTCTTCCTTG 964 Query 137418 AATAGAATCAAGCAGTGTCTGATATTTTAAGTTATCGGTAAAAATACCCTTTTCATGTTC 137477 |||||| || | | ||| ||||||||||| ||| ||||||| ||||||||||| Sbjct 965 AATAGAGTCTAATAATGTTTGATATTTTAAATTACTAAGAAAAATATGTTTTTCATGTTC 1024 Query 137478 CTGTAATTT 137486 |||| || Sbjct 1025 AGGTAAATT 1033 >seq249645 Length=476466 Score = 82.4 bits (90), Expect = 8e-11 Identities = 112/155 (72%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 139640 TTAATCTGGACACCATAATCTAAATGACGAATACGGTTTTCATCGATACCTTTATTATTC 139699 |||| ||| || || || || | |||||| | |||||| || || | ||| ||||| Sbjct 264955 TTAA-CTGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTT 264897 Query 139700 TTCAGTACGATTAATTTTTCATATTCCAGATGCCACATCGGATAATATAATGTCGCCGCA 139759 || ||||| | |||| ||| ||| | |||||| | || || | || ||||| ||| Sbjct 264896 TTGAGTACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCA 264837 Query 139760 CCACCACGTACACCACCTTGTGAACATGATTTCAC 139794 || |||||||| ||||||||||| || |||| || Sbjct 264836 CCGCCACGTACGCCACCTTGTGAGCAGCATTTAAC 264802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520371152491680