Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_031030.1 Length=170788 Score E Sequences producing significant alignments: (Bits) Value seq26767 219 5e-52 seq249645 109 6e-19 seq127984 86.0 7e-12 >seq26767 Length=1149 Score = 219 bits (242), Expect = 5e-52 Identities = 333/471 (71%), Gaps = 10/471 (2%) Strand=Plus/Plus Query 139466 CATCAAATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 139525 |||||| | ||| | ||| || ||||||| | ||||| | | |||||||| | ||| Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92 Query 139526 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 139585 | |||||||| ||||| | | | |||||| ||| |||||||| || |||||| | Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152 Query 139586 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 139645 ||| || || || || | || ||| || || ||||| ||||| || ||| | |||||||| Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 212 Query 139646 TTTCCAAAAAGGAATAACACCAGTATGACGTACTTCACCCATGCCAATTTTAGAACCTTC 139705 ||| ||||||||||| |||||||||| | |||| || | | ||| | |||| | Sbjct 213 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 272 Query 139706 AGCACGAATCATACCAACATTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 139765 |||||||| | ||| |||||||||||||||| || |||| ||| | ||||| ||||| Sbjct 273 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 332 Query 139766 TGA---AGCGGAAGCCTTATTGATAGACTTCAATGAATCTCCTGCC--TCAATAACGACG 139820 || || | ||| ||| ||||| | | || | || | | ||||| | || Sbjct 333 AGAACTAGTAGTAGCGTTA---ATAGAATCTA--GATTATCATCACATTCAATTAAAACA 387 Query 139821 CATGAACTAAACTGCCGAGTTGGAGTACGACAGCCAGCCATAATAGGAGTTGGTAATGAA 139880 ||||| ||||| || ||||| ||||| | | |||| |||||| || || ||||| ||| Sbjct 388 CATGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAA 447 Query 139881 ATCTGTCGAGTAGATACCGCTTCATAAAAACGAATAACGTGTTTTAATCTA 139931 || | ||| || | || | ||||||||| ||||| || | |||| Sbjct 448 ATTTTGAAAGTTGAAATGGCATTATAAAAACGCTGAACGTAATTCATTCTA 498 >seq249645 Length=476466 Score = 109 bits (120), Expect = 6e-19 Identities = 272/408 (67%), Gaps = 14/408 (3%) Strand=Plus/Minus Query 139482 TGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 139541 || || || || ||||||||||| | ||||| ||||| || || ||||||||| | Sbjct 264950 TGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGT 264891 Query 139542 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 139601 || || | |||||||| |||||||| | || || | || ||||| |||||| Sbjct 264890 ACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCA 264831 Query 139602 CGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAATA 139661 || | ||||| ||||| || ||||||| || || || || ||| ||||||||||| Sbjct 264830 CGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAATA 264771 Query 139662 ACACCAGTATGACGTACTTCACCCATGCCAATTTTAG---AACCTTCAGCACGAATCATA 139718 |||||||| || ||||||| |||| ||| ||| ||||| || | Sbjct 264770 CAGCCAGTATGCTGTGCTTCACC---GCCACGGATAGGGCTACCAAGGGCACGGATACGA 264714 Query 139719 CCAACATTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTG---AAGCGGAA 139775 || | || || || || ||||| || | || | ||| || || | || || Sbjct 264713 CCTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGTGGTG 264654 Query 139776 GCCTTATTGATAGACTTCAATGAATCTCCTGCCTCAATAACGACGCATGAACTAAACTGC 139835 || |||||||| | || ||| || || || | |||||| || |||||||| Sbjct 264653 GC---GTTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCTAAACTGA 264597 Query 139836 CGAGTTGGAGTACG-ACAGCCAGCCATAATAGGAGTTGGTAATGAAAT 139882 || | ||| ||||| ||| || | ||| || || ||||||| ||| || Sbjct 264596 CGCGATGGCGTACGCACA-CCTGACATGATTGGCGTTGGTAGTGAGAT 264550 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 137620 TCAATATTGGGCACGACTTGATTAAAGGAGCCCTCTTTTGATTCTTTAACAGAGACTGGT 137679 ||||| | ||||||||||| || ||| ||| ||||||||| |||| | |||||| | Sbjct 265916 TCAATCTCAGGCACGACTTGCTTTAAGATGCCATCTTTTGATGCTTTGATAGAGACCAGA 265857 Query 137680 CCACGTGGAGGCTCGATACCGTTTGT 137705 |||||||| |||||||||||||| || Sbjct 265856 CCACGTGGTGGCTCGATACCGTTGGT 265831 >seq127984 Length=21361 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 69897 TAAATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAAT 69956 ||||||||||||| | | ||||||||||||| ||||||||| ||||||| ||||||| | Sbjct 19915 TAAATTGGAGCGGGTGAAGAGAATCGAACTCTCATCATCAGCTTGGAAGGCTGAGGTTTT 19856 Query 69957 GCCATTATACGATATCCGCAAA 69978 ||| || || | | ||||||| Sbjct 19855 ACCACTAAACTACACCCGCAAA 19834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544568454138240