Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_031030.1
Length=170788
Score E
Sequences producing significant alignments: (Bits) Value
seq26767 219 5e-52
seq249645 109 6e-19
seq127984 86.0 7e-12
>seq26767
Length=1149
Score = 219 bits (242), Expect = 5e-52
Identities = 333/471 (71%), Gaps = 10/471 (2%)
Strand=Plus/Plus
Query 139466 CATCAAATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 139525
|||||| | ||| | ||| || ||||||| | ||||| | | |||||||| | |||
Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92
Query 139526 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 139585
| |||||||| ||||| | | | |||||| ||| |||||||| || |||||| |
Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152
Query 139586 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 139645
||| || || || || | || ||| || || ||||| ||||| || ||| | ||||||||
Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 212
Query 139646 TTTCCAAAAAGGAATAACACCAGTATGACGTACTTCACCCATGCCAATTTTAGAACCTTC 139705
||| ||||||||||| |||||||||| | |||| || | | ||| | |||| |
Sbjct 213 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 272
Query 139706 AGCACGAATCATACCAACATTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 139765
|||||||| | ||| |||||||||||||||| || |||| ||| | ||||| |||||
Sbjct 273 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 332
Query 139766 TGA---AGCGGAAGCCTTATTGATAGACTTCAATGAATCTCCTGCC--TCAATAACGACG 139820
|| || | ||| ||| ||||| | | || | || | | ||||| | ||
Sbjct 333 AGAACTAGTAGTAGCGTTA---ATAGAATCTA--GATTATCATCACATTCAATTAAAACA 387
Query 139821 CATGAACTAAACTGCCGAGTTGGAGTACGACAGCCAGCCATAATAGGAGTTGGTAATGAA 139880
||||| ||||| || ||||| ||||| | | |||| |||||| || || ||||| |||
Sbjct 388 CATGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAA 447
Query 139881 ATCTGTCGAGTAGATACCGCTTCATAAAAACGAATAACGTGTTTTAATCTA 139931
|| | ||| || | || | ||||||||| ||||| || | ||||
Sbjct 448 ATTTTGAAAGTTGAAATGGCATTATAAAAACGCTGAACGTAATTCATTCTA 498
>seq249645
Length=476466
Score = 109 bits (120), Expect = 6e-19
Identities = 272/408 (67%), Gaps = 14/408 (3%)
Strand=Plus/Minus
Query 139482 TGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 139541
|| || || || ||||||||||| | ||||| ||||| || || ||||||||| |
Sbjct 264950 TGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGT 264891
Query 139542 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 139601
|| || | |||||||| |||||||| | || || | || ||||| ||||||
Sbjct 264890 ACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCA 264831
Query 139602 CGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATGTTTCCAAAAAGGAATA 139661
|| | ||||| ||||| || ||||||| || || || || ||| |||||||||||
Sbjct 264830 CGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAATA 264771
Query 139662 ACACCAGTATGACGTACTTCACCCATGCCAATTTTAG---AACCTTCAGCACGAATCATA 139718
|||||||| || ||||||| |||| ||| ||| ||||| || |
Sbjct 264770 CAGCCAGTATGCTGTGCTTCACC---GCCACGGATAGGGCTACCAAGGGCACGGATACGA 264714
Query 139719 CCAACATTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTG---AAGCGGAA 139775
|| | || || || || ||||| || | || | ||| || || | || ||
Sbjct 264713 CCTGCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGTGGTG 264654
Query 139776 GCCTTATTGATAGACTTCAATGAATCTCCTGCCTCAATAACGACGCATGAACTAAACTGC 139835
|| |||||||| | || ||| || || || | |||||| || ||||||||
Sbjct 264653 GC---GTTGATAGAGTCTAAGCTATCACCACATTCGATTAAGACGCACGAGCTAAACTGA 264597
Query 139836 CGAGTTGGAGTACG-ACAGCCAGCCATAATAGGAGTTGGTAATGAAAT 139882
|| | ||| ||||| ||| || | ||| || || ||||||| ||| ||
Sbjct 264596 CGCGATGGCGTACGCACA-CCTGACATGATTGGCGTTGGTAGTGAGAT 264550
Score = 84.2 bits (92), Expect = 2e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 137620 TCAATATTGGGCACGACTTGATTAAAGGAGCCCTCTTTTGATTCTTTAACAGAGACTGGT 137679
||||| | ||||||||||| || ||| ||| ||||||||| |||| | |||||| |
Sbjct 265916 TCAATCTCAGGCACGACTTGCTTTAAGATGCCATCTTTTGATGCTTTGATAGAGACCAGA 265857
Query 137680 CCACGTGGAGGCTCGATACCGTTTGT 137705
|||||||| |||||||||||||| ||
Sbjct 265856 CCACGTGGTGGCTCGATACCGTTGGT 265831
>seq127984
Length=21361
Score = 86.0 bits (94), Expect = 7e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 69897 TAAATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAAT 69956
||||||||||||| | | ||||||||||||| ||||||||| ||||||| ||||||| |
Sbjct 19915 TAAATTGGAGCGGGTGAAGAGAATCGAACTCTCATCATCAGCTTGGAAGGCTGAGGTTTT 19856
Query 69957 GCCATTATACGATATCCGCAAA 69978
||| || || | | |||||||
Sbjct 19855 ACCACTAAACTACACCCGCAAA 19834
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 544568454138240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |