Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq146431 174 2e-38 seq27195 172 8e-38 seq205226 114 2e-20 seq100826 114 2e-20 seq161916 91.5 2e-13 seq231195 89.7 7e-13 seq191921 87.8 2e-12 >seq146431 Length=15796 Score = 174 bits (192), Expect = 2e-38 Identities = 402/597 (67%), Gaps = 14/597 (2%) Strand=Plus/Plus Query 48135 ATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAAT 48194 || ||||| || |||||||| || | |||||| |||| || ||||||||||| || Sbjct 4122 ATCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAG 4181 Query 48195 GTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAA 48254 || | || ||||| ||||||||||| || ||||| || || | ||| || || Sbjct 4182 GTTAATCCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGCTACCTGAG 4241 Query 48255 AAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTG 48314 ||||| || ||||| || || || || || | || || | || | | | | Sbjct 4242 AAGAAGATACCTTCAACACAAGCGAAAGC--TACGATTCGTTCAGCAAAAGTTTGAGATC 4299 Query 48315 TGT--ATCCACCGTTGT-GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATA 48371 | ||||| || | ||||| | ||| ||||| |||||||| |||||||| | Sbjct 4300 CATCGATCCAA-GTCATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTCGACT 4358 Query 48372 GCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTA 48431 || || ||| | | | || ||| ||||||| | ||||||||| | ||| |||||| Sbjct 4359 GCGCGGAATAGATGATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAGACTA 4418 Query 48432 TACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCT 48491 ||||| || || || ||||| ||||| || || ||||||||||| || | |||||| Sbjct 4419 TACATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCACGCGCTTCG 4478 Query 48492 GTGATCTGTACCTCCGTACA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACT 48550 | || ||||| || | ||| ||||| ||| | ||| || || ||||| ||| Sbjct 4479 GAGACTTGTACATCTG-ACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTCAGA 4537 Query 48551 AGCAGCAAAAAATGCTAATACATGTTTAATAAA---ATATTTTTCGTTGGAAGTCAGTTT 48607 || || || || || | || ||||| || || | || | ||| | | || || Sbjct 4538 TGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCG---TTGAGATT 4594 Query 48608 ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTC 48667 | ||||||| |||| ||||| |||||||||||| || ||||| || ||||| || Sbjct 4595 TTCCCAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTC 4654 Query 48668 TGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCT 48724 ||||| || ||||| | ||| || | ||| || || || || ||| ||||| Sbjct 4655 GGCTTTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 4711 >seq27195 Length=13093 Score = 172 bits (190), Expect = 8e-38 Identities = 399/592 (67%), Gaps = 16/592 (3%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || ||||| || || | ||||| |||| ||||| ||||| || || || | Sbjct 9231 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAAGTTAAC 9172 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||||| || || |||||||||||||| || || | ||| || || ||||| Sbjct 9171 CCAGGCATGAGCCCTCGTTTTTTGAGCCAGAAAATCGAACAGAAGCTACCGGAGAAGAAG 9112 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA--CTG-GCTTCGTTGTGT 48317 || ||||| ||| ||| || ||| | || || || || ||| | | | | | Sbjct 9111 ATACCTTCGACGCACGCGAAAGCGACGATTCGTTCAGCGAAAGTCTGAGATCCATCG--- 9055 Query 48318 ATCCACCGTTGT-GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| || | ||||| | ||| ||||| || ||||| |||||||| || || Sbjct 9054 ATCCAT-GTCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTGCGCG 8996 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 |||||| | | | || ||| ||||||| | ||| ||||| | | ||||||||||| Sbjct 8995 GAAGAGATGATCTCTCTCTTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTATACAT 8936 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGAT 48496 || || || ||||| ||||| || ||||| |||||||| ||| | |||||| | || Sbjct 8935 CTCAGAATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCTTCAGAGAC 8876 Query 48497 CTGTACCTCCGTACA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 ||||| || | ||| ||||| ||| | |||||| || ||||| ||| || | Sbjct 8875 TTGTACATCTG-ACATGAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGATGCGG 8817 Query 48556 CAAAAAATGCTAATACATGTTTAATAAA---ATATTTTTCGTTGGAAGTCAGTTTATTCC 48612 | || || || | || ||||| || || | || | ||| | | || || | || Sbjct 8816 CGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCG---TTGAGATTCTCCC 8760 Query 48613 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTT 48672 ||||| |||| ||||| |||||||||||| || ||||| || ||||| || |||| Sbjct 8759 AGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTT 8700 Query 48673 TTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCT 48724 | || ||||| | ||| || | ||| || || || || ||| ||||| Sbjct 8699 TCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 8648 >seq205226 Length=4968 Score = 114 bits (126), Expect = 2e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | || || | |||| | || | || ||| |||| |||||| Sbjct 4507 CCTCCTTGATCAACATACCGCGCAGTATCATTAAACACCCGCAGCATCGGAACAATACCA 4566 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||| |||||| || ||| | |||||||||||| ||||||||||||| ||| || Sbjct 4567 TTAGATTCTCCATTCGTGCCACAGATATAACTTCCAGTTGCGCGAATATTGTGAATCGAA 4626 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || || || ||| ||| ||| || |||||| ||||| || || Sbjct 4627 ACACCAATACCACCAGCTGATTTACTTATCGCAGCACACTCTTTCAACGTATCATAAATT 4686 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || || |||||| |||| | ||||| ||||| Sbjct 4687 CCCTCGATGCTATCATCCTTCATACAGACGAGAAAGCAGCT 4727 >seq100826 Length=54576 Score = 114 bits (126), Expect = 2e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | || || | ||| | || | || ||| |||| |||||| Sbjct 29540 CCTCCTTGATCAACATACCGAGCAGTATCATTGAATACACGCAGCATCGGAACAATACCA 29599 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||| |||||| || ||| ||||||||||||| |||||||||||||| ||| || Sbjct 29600 TTAGATTCTCCATTAGTGCCACGAATATAACTTCCAGTTGCGCGAATATTATGAATCGAA 29659 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || || || ||| ||| ||| || |||||| || || || || Sbjct 29660 ACACCAATACCACCAGCTGATTTACTTATAGCAGCACACTCTTTCAAAGTGTCATATATC 29719 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || || |||||| |||| | |||||| ||||| Sbjct 29720 CCCTCGATGCTATCATCCTTCATACAGACAAGAAAGCAGCT 29760 >seq161916 Length=396 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/208 (70%), Gaps = 10/208 (5%) Strand=Plus/Minus Query 77354 TGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAA 77413 |||||| | ||| | | ||||| ||| | | ||||||||| ||||||||| ||||| || Sbjct 361 TGATCCTTGATAGGATGAATAAGTTCCATATTTTTCAGCTAATTCACAACTAGCTTCTAA 302 Query 77414 TGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATC 77473 || || ||||| | || || || || | ||| || | | ||| |||| | Sbjct 301 CGCACCATAATACAAAGTCTCAAATATTTGTAAATTAAGCTTTCGTGATTCAGGTGAGCC 242 Query 77474 AAACGGATAATGTAAA-----AGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCA 77528 ||| ||| ||| | | |||||||| |||||||| || |||| ||||||||| Sbjct 241 AAATGGA-AATCTCATCATTGAGAATAAA----TCTGCTAACCCTTGAATACCAATACCA 187 Query 77529 ATAGGTCTATGTCTCTTATTGGAAATTT 77556 ||||| | |||||| ||||| ||| ||| Sbjct 186 ATAGGACGATGTCTTTTATTAGAAGTTT 159 >seq231195 Length=5996 Score = 89.7 bits (98), Expect = 7e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| || || | ||| | || || | ||| | || | || |||||||| |||||| Sbjct 3051 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACCA 3110 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || ||||||||||| || ||| ||||||||| |||| || |||||| || || Sbjct 3111 TTTGACGTTCCATTTGTGCCTCGAATGTAACTTCCAGTTGCACGGATATTATGAACTGAA 3170 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || || || || ||| | ||| || ||| | ||| || || || Sbjct 3171 ACACCAATGCCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 3230 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 ||||| || |||||||| ||||| Sbjct 3231 CCCTCGATGCTGTCATCTTTCATG 3254 >seq191921 Length=6033 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 78200 CAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGC 78259 ||||||||||| |||||| ||||| |||||||| || || ||| ||||||||| |||| Sbjct 4145 CAACATTGGAACAATACCATTAGACGTTCCATTGGTGCCTCGAATGTAACTTCCAGTTGC 4204 Query 78260 GCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACG 78319 || |||||| || || | || || || || || || ||| | ||| || Sbjct 4205 ACGGATATTATGAACTGAAACACCAATGCCACCAGCAGATTTGCTTATAACAGCACACTC 4264 Query 78320 TTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATG 78362 ||| | ||| || || || ||||| || |||||||| ||||| Sbjct 4265 TTTGAGTGTTTCATATATGCCCTCAATGCTGTCATCTTTCATG 4307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692348363073920