Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq146431 174 2e-38
seq27195 172 8e-38
seq205226 114 2e-20
seq100826 114 2e-20
seq161916 91.5 2e-13
seq231195 89.7 7e-13
seq191921 87.8 2e-12
>seq146431
Length=15796
Score = 174 bits (192), Expect = 2e-38
Identities = 402/597 (67%), Gaps = 14/597 (2%)
Strand=Plus/Plus
Query 48135 ATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAAT 48194
|| ||||| || |||||||| || | |||||| |||| || ||||||||||| ||
Sbjct 4122 ATCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAG 4181
Query 48195 GTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAA 48254
|| | || ||||| ||||||||||| || ||||| || || | ||| || ||
Sbjct 4182 GTTAATCCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGCTACCTGAG 4241
Query 48255 AAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTG 48314
||||| || ||||| || || || || || | || || | || | | | |
Sbjct 4242 AAGAAGATACCTTCAACACAAGCGAAAGC--TACGATTCGTTCAGCAAAAGTTTGAGATC 4299
Query 48315 TGT--ATCCACCGTTGT-GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATA 48371
| ||||| || | ||||| | ||| ||||| |||||||| |||||||| |
Sbjct 4300 CATCGATCCAA-GTCATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTCGACT 4358
Query 48372 GCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTA 48431
|| || ||| | | | || ||| ||||||| | ||||||||| | ||| ||||||
Sbjct 4359 GCGCGGAATAGATGATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAGACTA 4418
Query 48432 TACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCT 48491
||||| || || || ||||| ||||| || || ||||||||||| || | ||||||
Sbjct 4419 TACATCTCAGAATGGATATTCTCAATCGCGATTTGAAATCCGTAGAATGCACGCGCTTCG 4478
Query 48492 GTGATCTGTACCTCCGTACA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACT 48550
| || ||||| || | ||| ||||| ||| | ||| || || ||||| |||
Sbjct 4479 GAGACTTGTACATCTG-ACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTCAGA 4537
Query 48551 AGCAGCAAAAAATGCTAATACATGTTTAATAAA---ATATTTTTCGTTGGAAGTCAGTTT 48607
|| || || || || | || ||||| || || | || | ||| | | || ||
Sbjct 4538 TGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCG---TTGAGATT 4594
Query 48608 ATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTC 48667
| ||||||| |||| ||||| |||||||||||| || ||||| || ||||| ||
Sbjct 4595 TTCCCAGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTC 4654
Query 48668 TGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCT 48724
||||| || ||||| | ||| || | ||| || || || || ||| |||||
Sbjct 4655 GGCTTTCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 4711
>seq27195
Length=13093
Score = 172 bits (190), Expect = 8e-38
Identities = 399/592 (67%), Gaps = 16/592 (3%)
Strand=Plus/Minus
Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200
|| || ||||| || || | ||||| |||| ||||| ||||| || || || |
Sbjct 9231 CAAGCGAAATCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAAGTTAAC 9172
Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260
|| ||||| || || |||||||||||||| || || | ||| || || |||||
Sbjct 9171 CCAGGCATGAGCCCTCGTTTTTTGAGCCAGAAAATCGAACAGAAGCTACCGGAGAAGAAG 9112
Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA--CTG-GCTTCGTTGTGT 48317
|| ||||| ||| ||| || ||| | || || || || ||| | | | | |
Sbjct 9111 ATACCTTCGACGCACGCGAAAGCGACGATTCGTTCAGCGAAAGTCTGAGATCCATCG--- 9055
Query 48318 ATCCACCGTTGT-GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376
||||| || | ||||| | ||| ||||| || ||||| |||||||| || ||
Sbjct 9054 ATCCAT-GTCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTGCGCG 8996
Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436
|||||| | | | || ||| ||||||| | ||| ||||| | | |||||||||||
Sbjct 8995 GAAGAGATGATCTCTCTCTTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTATACAT 8936
Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGAT 48496
|| || || ||||| ||||| || ||||| |||||||| ||| | |||||| | ||
Sbjct 8935 CTCAGAATGGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCTTCAGAGAC 8876
Query 48497 CTGTACCTCCGTACA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555
||||| || | ||| ||||| ||| | |||||| || ||||| ||| || |
Sbjct 8875 TTGTACATCTG-ACATGAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGATGCGG 8817
Query 48556 CAAAAAATGCTAATACATGTTTAATAAA---ATATTTTTCGTTGGAAGTCAGTTTATTCC 48612
| || || || | || ||||| || || | || | ||| | | || || | ||
Sbjct 8816 CGAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCTCCGTCG---TTGAGATTCTCCC 8760
Query 48613 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTT 48672
||||| |||| ||||| |||||||||||| || ||||| || ||||| || ||||
Sbjct 8759 AGTCACGTCCGTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTT 8700
Query 48673 TTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCT 48724
| || ||||| | ||| || | ||| || || || || ||| |||||
Sbjct 8699 TCTTGTACATCTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 8648
>seq205226
Length=4968
Score = 114 bits (126), Expect = 2e-20
Identities = 158/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218
||||| ||||| | ||| | || || | |||| | || | || ||| |||| ||||||
Sbjct 4507 CCTCCTTGATCAACATACCGCGCAGTATCATTAAACACCCGCAGCATCGGAACAATACCA 4566
Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278
|||||| |||||| || ||| | |||||||||||| ||||||||||||| ||| ||
Sbjct 4567 TTAGATTCTCCATTCGTGCCACAGATATAACTTCCAGTTGCGCGAATATTGTGAATCGAA 4626
Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338
| || || || || || ||| ||| ||| || |||||| ||||| || ||
Sbjct 4627 ACACCAATACCACCAGCTGATTTACTTATCGCAGCACACTCTTTCAACGTATCATAAATT 4686
Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379
||||| || || |||||| |||| | ||||| |||||
Sbjct 4687 CCCTCGATGCTATCATCCTTCATACAGACGAGAAAGCAGCT 4727
>seq100826
Length=54576
Score = 114 bits (126), Expect = 2e-20
Identities = 158/221 (71%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218
||||| ||||| | ||| | || || | ||| | || | || ||| |||| ||||||
Sbjct 29540 CCTCCTTGATCAACATACCGAGCAGTATCATTGAATACACGCAGCATCGGAACAATACCA 29599
Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278
|||||| |||||| || ||| ||||||||||||| |||||||||||||| ||| ||
Sbjct 29600 TTAGATTCTCCATTAGTGCCACGAATATAACTTCCAGTTGCGCGAATATTATGAATCGAA 29659
Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338
| || || || || || ||| ||| ||| || |||||| || || || ||
Sbjct 29660 ACACCAATACCACCAGCTGATTTACTTATAGCAGCACACTCTTTCAAAGTGTCATATATC 29719
Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379
||||| || || |||||| |||| | |||||| |||||
Sbjct 29720 CCCTCGATGCTATCATCCTTCATACAGACAAGAAAGCAGCT 29760
>seq161916
Length=396
Score = 91.5 bits (100), Expect = 2e-13
Identities = 146/208 (70%), Gaps = 10/208 (5%)
Strand=Plus/Minus
Query 77354 TGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAA 77413
|||||| | ||| | | ||||| ||| | | ||||||||| ||||||||| ||||| ||
Sbjct 361 TGATCCTTGATAGGATGAATAAGTTCCATATTTTTCAGCTAATTCACAACTAGCTTCTAA 302
Query 77414 TGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATC 77473
|| || ||||| | || || || || | ||| || | | ||| |||| |
Sbjct 301 CGCACCATAATACAAAGTCTCAAATATTTGTAAATTAAGCTTTCGTGATTCAGGTGAGCC 242
Query 77474 AAACGGATAATGTAAA-----AGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCA 77528
||| ||| ||| | | |||||||| |||||||| || |||| |||||||||
Sbjct 241 AAATGGA-AATCTCATCATTGAGAATAAA----TCTGCTAACCCTTGAATACCAATACCA 187
Query 77529 ATAGGTCTATGTCTCTTATTGGAAATTT 77556
||||| | |||||| ||||| ||| |||
Sbjct 186 ATAGGACGATGTCTTTTATTAGAAGTTT 159
>seq231195
Length=5996
Score = 89.7 bits (98), Expect = 7e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218
||||| || || | ||| | || || | ||| | || | || |||||||| ||||||
Sbjct 3051 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACCA 3110
Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278
|| || ||||||||||| || ||| ||||||||| |||| || |||||| || ||
Sbjct 3111 TTTGACGTTCCATTTGTGCCTCGAATGTAACTTCCAGTTGCACGGATATTATGAACTGAA 3170
Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338
| || || || || || || ||| | ||| || ||| | ||| || || ||
Sbjct 3171 ACACCAATGCCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 3230
Query 78339 CCCTCTATACTGTCATCCATCATG 78362
||||| || |||||||| |||||
Sbjct 3231 CCCTCGATGCTGTCATCTTTCATG 3254
>seq191921
Length=6033
Score = 87.8 bits (96), Expect = 2e-12
Identities = 117/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 78200 CAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGC 78259
||||||||||| |||||| ||||| |||||||| || || ||| ||||||||| ||||
Sbjct 4145 CAACATTGGAACAATACCATTAGACGTTCCATTGGTGCCTCGAATGTAACTTCCAGTTGC 4204
Query 78260 GCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACG 78319
|| |||||| || || | || || || || || || ||| | ||| ||
Sbjct 4205 ACGGATATTATGAACTGAAACACCAATGCCACCAGCAGATTTGCTTATAACAGCACACTC 4264
Query 78320 TTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATG 78362
||| | ||| || || || ||||| || |||||||| |||||
Sbjct 4265 TTTGAGTGTTTCATATATGCCCTCAATGCTGTCATCTTTCATG 4307
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 692348363073920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |