Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_031034.1
Length=161140
Score E
Sequences producing significant alignments: (Bits) Value
seq158858 95.1 1e-14
>seq158858
Length=235449
Score = 95.1 bits (104), Expect = 1e-14
Identities = 138/193 (72%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 25650 GAAATTAAGTCATCTAGAATAATAACTTTGTGACCACGTTCCATTTCTCCGTAAACTTCA 25709
||| ||| |||||| ||||| | |||||||||||| ||| || || || || ||
Sbjct 213177 GAACTTAGGTCATCAAGAATTACAACTTTGTGACCTGGTTTGATGTCACCAATAATTTTT 213118
Query 25710 AAGCTTATGATATTACCAGTTTCGAAGTCTCGCTTCTTGTGACCTACTAA--CGTTTTGA 25767
| |||| ||| || || ||||| | || || ||||| | |||||||| | || |
Sbjct 213117 ATGCTTTCGATTTTCCCTGTTTCAACGTTACGTTTCTTAAGCCCTACTAATTCATTAGTA 213058
Query 25768 ATCCTTTTAGATTCTTATAACGTTTTTCCGCTCCACCATCTGGGAACATTAGATAATCTT 25827
|| | |||||| |||||||||||| || ||| |||| ||||| | || ||||||||
Sbjct 213057 ATGC--CTAGATTACTATAACGTTTTTGAGCACCAGCATCCGGGAATAGTACATAATCTT 213000
Query 25828 TAGATTTATCGAA 25840
| |||||| ||
Sbjct 212999 TTTCTTTATCAAA 212987
Score = 89.7 bits (98), Expect = 5e-13
Identities = 508/798 (64%), Gaps = 23/798 (3%)
Strand=Plus/Minus
Query 24047 CATCCTGTTCTACTACAGCTACGCGACCTTTGTTAGATTTTTTAGTTCCATCATCAGTCT 24106
|||| | |||| ||| ||||||| || | |||||| |||||||||||||| || |
Sbjct 214948 CATCATCTTCTGTTACTACTACGCGGCCACGTTGAGATTTCTTAGTTCCATCATCTGTTT 214889
Query 24107 TAGGATTCTTTTGGATTAATTTCTCTTCGCCTTTAATTTGCGCCCACGTCGCCTTCATCG 24166
| |||| ||| | ||| ||||| || || | | || | || || ||||| |
Sbjct 214888 TTGGATCCTTGAACAATAAACGTTCTTCTCCATTTACTACAGCATATGTAGCTTTCATAG 214829
Query 24167 CGAATCCTAAAGAGTCACGAGTATTGTAAGCATAAGTGTAAGAACCTACTCCTAATACTA 24226
| || |||| ||| || ||||| | || |||| ||||| || || || || || |
Sbjct 214828 CAAACCCTAGAGAATCGCGAGTCTGATATTGGAAAGTATAAGATCCCACGCCGAAAACAA 214769
Query 24227 CGTTT-TCGATAGAGAATCCTGCTGCTTCTAAA----CGAGAGTAGATAGTAATCATACG 24281
||||| | || || || ||| | ||||||| | | | ||| | | |||
Sbjct 214768 CGTTTGTTGA-AGCAAAGCCTTTTTCTTCTAACTTCTCAACAATAGCTTTTGC----ACG 214714
Query 24282 CTCATAAGTGATAGAATCTCCGTAGATTGCACCGATATAAGGTGGTAACACTTTGTATCC 24341
|||| ||| ||||| || || ||||||||||| |||| || ||| | ||| || ||
Sbjct 214713 CTCAAGAGTAATAGAGTCACCATAGATTGCACCAATATGAGTATCTAATAGTTTATAACC 214654
Query 24342 CTTGCTATTAACTGTATATCCGAAGAAGTGTGCTAATGCGGCTACTAATCCCATACGAGC 24401
||| | ||| ||| || |||| | ||| || | | || ||| |||| |
Sbjct 214653 CTTCTCAGTAATTGTTCCACCAAAGATATCCCATAAAGCCTCAATTAGTCCTTTACGTTC 214594
Query 24402 CCACT-TGTTATCTGCGTTAGGGTCACCACATAAGA-TATCTTCTGGAATACCTGAGTCC 24459
| |||| | ||| | |||| |||| ||||| || | || || ||
Sbjct 214593 AAGTTCTGTTTT-TGCTTCTGGGTTACCAG-TAAGAATAAGAACAGGGTCTCCACTATCA 214536
Query 24460 GGACGAACTACAACTTTACCGTCACGACCTTTAATTTC-TTCAGCTAATTTT-GGTAGAA 24517
||||||| || | ||| ||||| | | ||||| ||| ||| || ||||
Sbjct 214535 GGACGAATAACCATACGACCATCACGTTCCATGATTTCCTTCT--TAAGACGAGGAAGAA 214478
Query 24518 CACGAGATAC-ATTGTCCCAGAAGTCAAATGAATCAGATACGATACTTACAATACCAGTA 24576
||| | || ||||||| ||| | | || || || | ||| | | || ||
Sbjct 214477 TTTCTCCTACTACTG-CCCAGAAATCATACGTGTCTGAAACTACACTGAAGAAGCCTTTA 214419
Query 24577 GGGTATACTTCTGTAATTAATCGTTTGAATGTTTCGTACTCATCTAAG---TCTTCACCT 24633
|| ||||| || || || | || ||| | ||||| | ||||| | ||| || ||
Sbjct 214418 GGATATACCTCAGTTATAAGACGCTTGTACATTTCGAATTCATCACGGCTATCTGCATCT 214359
Query 24634 GCTGATGCGCACATAACACTATGTTCAGTCGCGCTTACAGAACCTGCTACTAATTCTGTT 24693
| ||| ||||||| ||||||||| || || || | |||||||||| ||
Sbjct 214358 GTGTTTGCTGACATAACTGAATGTTCAGTAGCTGGTATTGATGTTCCTACTAATTCCTTT 214299
Query 24694 TCAACATTAGCTTTATAGTATTTTTCTAAATACACGATAGCTGGAATGCTGTCAGTACCA 24753
|||| || || || || || | || | ||| | |||||||||| | || || ||
Sbjct 214298 TCAATGTTCGCATTGTAATAATGCTCAAGATAAGCAATAGCTGGAACCGTATCTGTTCCT 214239
Query 24754 ACGAATGATAATAAGTGACCAGAACCAGATTTCTCTGTAGTCTGTAATGAACCCATACCG 24813
||||||||||||||||| || | ||| | | || || ||| | ||| |||
Sbjct 214238 ACGAATGATAATAAGTGTCCTGCTCCACTCGCCATAGCAGACTCTAAGCTGCTCATTCCG 214179
Query 24814 CGCATTGAGAAATCATGT 24831
||||| |||||||| |||
Sbjct 214178 CGCATAGAGAAATCGTGT 214161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 513797982768000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |