Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_031034.1 Length=161140 Score E Sequences producing significant alignments: (Bits) Value seq158858 95.1 1e-14 >seq158858 Length=235449 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 25650 GAAATTAAGTCATCTAGAATAATAACTTTGTGACCACGTTCCATTTCTCCGTAAACTTCA 25709 ||| ||| |||||| ||||| | |||||||||||| ||| || || || || || Sbjct 213177 GAACTTAGGTCATCAAGAATTACAACTTTGTGACCTGGTTTGATGTCACCAATAATTTTT 213118 Query 25710 AAGCTTATGATATTACCAGTTTCGAAGTCTCGCTTCTTGTGACCTACTAA--CGTTTTGA 25767 | |||| ||| || || ||||| | || || ||||| | |||||||| | || | Sbjct 213117 ATGCTTTCGATTTTCCCTGTTTCAACGTTACGTTTCTTAAGCCCTACTAATTCATTAGTA 213058 Query 25768 ATCCTTTTAGATTCTTATAACGTTTTTCCGCTCCACCATCTGGGAACATTAGATAATCTT 25827 || | |||||| |||||||||||| || ||| |||| ||||| | || |||||||| Sbjct 213057 ATGC--CTAGATTACTATAACGTTTTTGAGCACCAGCATCCGGGAATAGTACATAATCTT 213000 Query 25828 TAGATTTATCGAA 25840 | |||||| || Sbjct 212999 TTTCTTTATCAAA 212987 Score = 89.7 bits (98), Expect = 5e-13 Identities = 508/798 (64%), Gaps = 23/798 (3%) Strand=Plus/Minus Query 24047 CATCCTGTTCTACTACAGCTACGCGACCTTTGTTAGATTTTTTAGTTCCATCATCAGTCT 24106 |||| | |||| ||| ||||||| || | |||||| |||||||||||||| || | Sbjct 214948 CATCATCTTCTGTTACTACTACGCGGCCACGTTGAGATTTCTTAGTTCCATCATCTGTTT 214889 Query 24107 TAGGATTCTTTTGGATTAATTTCTCTTCGCCTTTAATTTGCGCCCACGTCGCCTTCATCG 24166 | |||| ||| | ||| ||||| || || | | || | || || ||||| | Sbjct 214888 TTGGATCCTTGAACAATAAACGTTCTTCTCCATTTACTACAGCATATGTAGCTTTCATAG 214829 Query 24167 CGAATCCTAAAGAGTCACGAGTATTGTAAGCATAAGTGTAAGAACCTACTCCTAATACTA 24226 | || |||| ||| || ||||| | || |||| ||||| || || || || || | Sbjct 214828 CAAACCCTAGAGAATCGCGAGTCTGATATTGGAAAGTATAAGATCCCACGCCGAAAACAA 214769 Query 24227 CGTTT-TCGATAGAGAATCCTGCTGCTTCTAAA----CGAGAGTAGATAGTAATCATACG 24281 ||||| | || || || ||| | ||||||| | | | ||| | | ||| Sbjct 214768 CGTTTGTTGA-AGCAAAGCCTTTTTCTTCTAACTTCTCAACAATAGCTTTTGC----ACG 214714 Query 24282 CTCATAAGTGATAGAATCTCCGTAGATTGCACCGATATAAGGTGGTAACACTTTGTATCC 24341 |||| ||| ||||| || || ||||||||||| |||| || ||| | ||| || || Sbjct 214713 CTCAAGAGTAATAGAGTCACCATAGATTGCACCAATATGAGTATCTAATAGTTTATAACC 214654 Query 24342 CTTGCTATTAACTGTATATCCGAAGAAGTGTGCTAATGCGGCTACTAATCCCATACGAGC 24401 ||| | ||| ||| || |||| | ||| || | | || ||| |||| | Sbjct 214653 CTTCTCAGTAATTGTTCCACCAAAGATATCCCATAAAGCCTCAATTAGTCCTTTACGTTC 214594 Query 24402 CCACT-TGTTATCTGCGTTAGGGTCACCACATAAGA-TATCTTCTGGAATACCTGAGTCC 24459 | |||| | ||| | |||| |||| ||||| || | || || || Sbjct 214593 AAGTTCTGTTTT-TGCTTCTGGGTTACCAG-TAAGAATAAGAACAGGGTCTCCACTATCA 214536 Query 24460 GGACGAACTACAACTTTACCGTCACGACCTTTAATTTC-TTCAGCTAATTTT-GGTAGAA 24517 ||||||| || | ||| ||||| | | ||||| ||| ||| || |||| Sbjct 214535 GGACGAATAACCATACGACCATCACGTTCCATGATTTCCTTCT--TAAGACGAGGAAGAA 214478 Query 24518 CACGAGATAC-ATTGTCCCAGAAGTCAAATGAATCAGATACGATACTTACAATACCAGTA 24576 ||| | || ||||||| ||| | | || || || | ||| | | || || Sbjct 214477 TTTCTCCTACTACTG-CCCAGAAATCATACGTGTCTGAAACTACACTGAAGAAGCCTTTA 214419 Query 24577 GGGTATACTTCTGTAATTAATCGTTTGAATGTTTCGTACTCATCTAAG---TCTTCACCT 24633 || ||||| || || || | || ||| | ||||| | ||||| | ||| || || Sbjct 214418 GGATATACCTCAGTTATAAGACGCTTGTACATTTCGAATTCATCACGGCTATCTGCATCT 214359 Query 24634 GCTGATGCGCACATAACACTATGTTCAGTCGCGCTTACAGAACCTGCTACTAATTCTGTT 24693 | ||| ||||||| ||||||||| || || || | |||||||||| || Sbjct 214358 GTGTTTGCTGACATAACTGAATGTTCAGTAGCTGGTATTGATGTTCCTACTAATTCCTTT 214299 Query 24694 TCAACATTAGCTTTATAGTATTTTTCTAAATACACGATAGCTGGAATGCTGTCAGTACCA 24753 |||| || || || || || | || | ||| | |||||||||| | || || || Sbjct 214298 TCAATGTTCGCATTGTAATAATGCTCAAGATAAGCAATAGCTGGAACCGTATCTGTTCCT 214239 Query 24754 ACGAATGATAATAAGTGACCAGAACCAGATTTCTCTGTAGTCTGTAATGAACCCATACCG 24813 ||||||||||||||||| || | ||| | | || || ||| | ||| ||| Sbjct 214238 ACGAATGATAATAAGTGTCCTGCTCCACTCGCCATAGCAGACTCTAAGCTGCTCATTCCG 214179 Query 24814 CGCATTGAGAAATCATGT 24831 ||||| |||||||| ||| Sbjct 214178 CGCATAGAGAAATCGTGT 214161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513797982768000