Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_031037.1 Length=163041 Score E Sequences producing significant alignments: (Bits) Value seq158858 98.7 1e-15 seq149378 87.8 2e-12 >seq158858 Length=235449 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 24772 CTACGCGACCTTTGTTAGATTTTTTAGTTCCATCATCCGTTTTAGGATTCTTCTGGATTA 24831 ||||||| || | |||||| |||||||||||||| ||||| |||| ||| | || Sbjct 214930 CTACGCGGCCACGTTGAGATTTCTTAGTTCCATCATCTGTTTTTGGATCCTTGAACAATA 214871 Query 24832 GTTTCTCTTCACCATTTACTTGAGCCCATGTCGCTTTCATCGCAAATCCTAAGGAATCGC 24891 ||||| ||||||||| ||| |||| |||||||| ||||| |||| ||||||| Sbjct 214870 AACGTTCTTCTCCATTTACTACAGCATATGTAGCTTTCATAGCAAACCCTAGAGAATCGC 214811 Query 24892 GGGTGTTGTACGCATAAGTGTAAGACCCTACGCCTAATACTACGTTT 24938 | || | || |||| ||||| || ||||| || || |||||| Sbjct 214810 GAGTCTGATATTGGAAAGTATAAGATCCCACGCCGAAAACAACGTTT 214764 >seq149378 Length=35185 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 35975 CTGGTGTAAATGGCGCTTGGAAGATTCCAGTTGTGTCTGCTGAAGATGTAAACTTCATCA 36034 ||||| | ||||||||||||||| ||||| | | || | | |||||| || || | | Sbjct 23102 CTGGTATGAATGGCGCTTGGAAGGTTCCAATGATTTCAGGTCAAGATGCTAAGTTTGTTA 23161 Query 36035 ATATGACTCAGTCATCTAAAGACATGGAATTCGAAAGATGGTTAAACTACCTTATCAACG 36094 | ||||| ||| | ||| || |||||||| |||| | || |||||||| || | | Sbjct 23162 ACATGACACAGACTAGTAAGGATATGGAATTTGAAAAGTTTTTGAACTACCTAATTTATG 23221 Query 36095 TTATGTGTAGTATTTTCGCAATTGACCCATCTGAGATTAACTTCCCTAACCGAGGCGGCG 36154 |||| | ||| | |||| | ||| || |||||||| ||||| || || || | Sbjct 23222 TTATTGCTGCCGTTTACCAAATTCAGCCAGAAGAAATTAACTTTCCTAATCGTGGGGGAG 23281 Query 36155 CTACAGGG 36162 |||| ||| Sbjct 23282 CTACTGGG 23289 Score = 87.8 bits (96), Expect = 2e-12 Identities = 192/282 (68%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 46495 ATGGCAAGTTTAGCTAACCAAACTGTCCAATCCGCAAATACCGTCT--ACTTCATGATTA 46552 ||||||| | || || ||||| || || ||| || |||| | | ||||||||| Sbjct 32791 ATGGCAACACTTGCAAAGCAAACGGTTGAAACCGGTAA--CCGTATTTATATCATGATTA 32848 Query 46553 AGAACGTACCAATCGCTCGTGCACAGTCAATCAGTTCAGAGCGTTCATTCGGTACAACTG 46612 |||||| | || | |||||| || ||| | | | || || ||||||||||| | Sbjct 32849 AGAACGAAGTTATTGGTCGTGCTCAATCATTAACTGGTGACCGCTCATTCGGTACCCAAG 32908 Query 46613 GTGTTTACGAGATTGGTTCTATCATGCCTAAAGAGCACGTTTACTTACGATATGAAGGTA 46672 |||| || || ||||||| |||||||| | || ||||| | |||| ||| |||| Sbjct 32909 GTGTGTATGAACTTGGTTCAATCATGCCACATGAACACGTATTCTTAAAGTATACGGGTA 32968 Query 46673 CTGTAACAGTTGACCGTTTCCGTATGCGTAAGGAGAACTTAGCTGCATTAG--GTTTCGC 46730 | ||| ||||||| |||| || | |||| | || | ||| || || | || | Sbjct 32969 CGGTATCAGTTGAACGTTATCGGTTACGTACTGGTAATATGTCTG-ATAAGAAGATT-AC 33026 Query 46731 CGCTCTTGGTGAAGAAGTATTACAAATGGATATCATGGACAT 46772 ||||| |||||||| || || | || |||||| | || || Sbjct 33027 TGCTCTAGGTGAAGATGTTTTGAAGATTGATATCTTAGATAT 33068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519860862750880