Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_031037.1
Length=163041
Score E
Sequences producing significant alignments: (Bits) Value
seq158858 98.7 1e-15
seq149378 87.8 2e-12
>seq158858
Length=235449
Score = 98.7 bits (108), Expect = 1e-15
Identities = 122/167 (73%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 24772 CTACGCGACCTTTGTTAGATTTTTTAGTTCCATCATCCGTTTTAGGATTCTTCTGGATTA 24831
||||||| || | |||||| |||||||||||||| ||||| |||| ||| | ||
Sbjct 214930 CTACGCGGCCACGTTGAGATTTCTTAGTTCCATCATCTGTTTTTGGATCCTTGAACAATA 214871
Query 24832 GTTTCTCTTCACCATTTACTTGAGCCCATGTCGCTTTCATCGCAAATCCTAAGGAATCGC 24891
||||| ||||||||| ||| |||| |||||||| ||||| |||| |||||||
Sbjct 214870 AACGTTCTTCTCCATTTACTACAGCATATGTAGCTTTCATAGCAAACCCTAGAGAATCGC 214811
Query 24892 GGGTGTTGTACGCATAAGTGTAAGACCCTACGCCTAATACTACGTTT 24938
| || | || |||| ||||| || ||||| || || ||||||
Sbjct 214810 GAGTCTGATATTGGAAAGTATAAGATCCCACGCCGAAAACAACGTTT 214764
>seq149378
Length=35185
Score = 87.8 bits (96), Expect = 2e-12
Identities = 132/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 35975 CTGGTGTAAATGGCGCTTGGAAGATTCCAGTTGTGTCTGCTGAAGATGTAAACTTCATCA 36034
||||| | ||||||||||||||| ||||| | | || | | |||||| || || | |
Sbjct 23102 CTGGTATGAATGGCGCTTGGAAGGTTCCAATGATTTCAGGTCAAGATGCTAAGTTTGTTA 23161
Query 36035 ATATGACTCAGTCATCTAAAGACATGGAATTCGAAAGATGGTTAAACTACCTTATCAACG 36094
| ||||| ||| | ||| || |||||||| |||| | || |||||||| || | |
Sbjct 23162 ACATGACACAGACTAGTAAGGATATGGAATTTGAAAAGTTTTTGAACTACCTAATTTATG 23221
Query 36095 TTATGTGTAGTATTTTCGCAATTGACCCATCTGAGATTAACTTCCCTAACCGAGGCGGCG 36154
|||| | ||| | |||| | ||| || |||||||| ||||| || || || |
Sbjct 23222 TTATTGCTGCCGTTTACCAAATTCAGCCAGAAGAAATTAACTTTCCTAATCGTGGGGGAG 23281
Query 36155 CTACAGGG 36162
|||| |||
Sbjct 23282 CTACTGGG 23289
Score = 87.8 bits (96), Expect = 2e-12
Identities = 192/282 (68%), Gaps = 8/282 (3%)
Strand=Plus/Plus
Query 46495 ATGGCAAGTTTAGCTAACCAAACTGTCCAATCCGCAAATACCGTCT--ACTTCATGATTA 46552
||||||| | || || ||||| || || ||| || |||| | | |||||||||
Sbjct 32791 ATGGCAACACTTGCAAAGCAAACGGTTGAAACCGGTAA--CCGTATTTATATCATGATTA 32848
Query 46553 AGAACGTACCAATCGCTCGTGCACAGTCAATCAGTTCAGAGCGTTCATTCGGTACAACTG 46612
|||||| | || | |||||| || ||| | | | || || ||||||||||| |
Sbjct 32849 AGAACGAAGTTATTGGTCGTGCTCAATCATTAACTGGTGACCGCTCATTCGGTACCCAAG 32908
Query 46613 GTGTTTACGAGATTGGTTCTATCATGCCTAAAGAGCACGTTTACTTACGATATGAAGGTA 46672
|||| || || ||||||| |||||||| | || ||||| | |||| ||| ||||
Sbjct 32909 GTGTGTATGAACTTGGTTCAATCATGCCACATGAACACGTATTCTTAAAGTATACGGGTA 32968
Query 46673 CTGTAACAGTTGACCGTTTCCGTATGCGTAAGGAGAACTTAGCTGCATTAG--GTTTCGC 46730
| ||| ||||||| |||| || | |||| | || | ||| || || | || |
Sbjct 32969 CGGTATCAGTTGAACGTTATCGGTTACGTACTGGTAATATGTCTG-ATAAGAAGATT-AC 33026
Query 46731 CGCTCTTGGTGAAGAAGTATTACAAATGGATATCATGGACAT 46772
||||| |||||||| || || | || |||||| | || ||
Sbjct 33027 TGCTCTAGGTGAAGATGTTTTGAAGATTGATATCTTAGATAT 33068
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 519860862750880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |