Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq27195 223 5e-53 seq146431 196 7e-45 seq100826 120 4e-22 seq205226 111 2e-19 seq161916 95.1 2e-14 seq231195 89.7 7e-13 seq191921 89.7 7e-13 >seq27195 Length=13093 Score = 223 bits (246), Expect = 5e-53 Identities = 584/882 (66%), Gaps = 12/882 (1%) Strand=Plus/Minus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| ||||| ||||| || | ||||| ||||| |||||||| |||| | || || Sbjct 9523 TTTCTGGTAATCACCAACTCTCTTCTCAAAAAAGTTAGTTTTCCCTTGAAGCGAGATTAA 9464 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 ||||| |||||||||||||||| ||| || | || | | || | | | Sbjct 9463 CTCCATCCAATCAAACGGATTAGTCACACCGTACACCTTACCATACCCAAGCGCACCCAA 9404 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 || ||||| ||||| || || |||||| |||||| ||||| |||||| |||| | Sbjct 9403 AAGCCTATCCGCAACAAACTCAATATACTCACTCATCAATTCACGATTCATCCCTACCAA 9344 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 | ||| || || || | ||||||| || || ||||| || | | || Sbjct 9343 CGCGCACGGAAGCGCGTCGCACACAAACTCTCTCTCGATCTCCACAGCGTCGCACACAAT 9284 Query 46578 CGATGTTACTGTTTCCTCACTTGG--TGGATGCATCAAATGTTTAAACATTAAACATGCA 46635 ||| | ||| ||||| | | | | | || ||| || | | | || || Sbjct 9283 CGACTTCACTCGCTCCTCCGTCAGCTTCGTTCGGAGAAGTGTGTAGA--TCAGGCAAGCG 9226 Query 46636 AAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGC 46695 ||||| || || | |||||| |||| ||||| ||||| || || || | ||||||| Sbjct 9225 AAATCGCAGTGTAAGCCTTCGTCTCGTGAGATTAACTCGTTTGAGAAAGTTAACCCAGGC 9166 Query 46696 ATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCT 46755 || || || || ||||||||||| || || | ||| || || ||||| || ||| Sbjct 9165 ATGAGCCCTCGTTTTTTGAGCCAGAAAATCGAACAGAAGCTACCGGAGAAGAAGATACCT 9106 Query 46756 TCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA--CTGGCATCATTATGAATCCACC 46813 || || |||||| ||||| | || || || || ||| ||| || ||||| Sbjct 9105 TCGACGCACGCGAAAGCGACGATTCGTTCAGCGAAAGTCTGAGATCC--ATCGATCCATG 9048 Query 46814 TTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAA 46873 | |||||| | ||| || || || ||||| |||||||| || || |||||| Sbjct 9047 TCATAGCCCATTGAGCTTTCTTAGCGACGCAAGGGATTGTTTCGATTGCGCGGAAGAGAT 8988 Query 46874 AGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAAT 46933 | | | || | ||||||| | |||||||| | | ||||||||||| || |||| Sbjct 8987 GATCTCTCTCTTTGTTATCTTTGATGTATGTATCCAGAAGGAGACTATACATCTCAGAAT 8928 Query 46934 GAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCT 46993 | || || ||||| || ||||| |||||||| ||| | ||||||| | ||||| | Sbjct 8927 GGATATTCTCAATCGCGATCTGGAATCCGTAGAAAGCACGCGCTTCAGAGACTTGTACAT 8868 Query 46994 CTGTACA-AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAAT 47052 ||| ||| ||||| || | |||||| || ||||| ||| || || || || Sbjct 8867 CTG-ACATGAATCGAGAAGCGAGATTCTCTAGAACGATTCCGTCAGATGCGGCGAAGAAA 8809 Query 47053 GCCAATACATGTTTAATAAAATATTTTTCATCGGTAG-TCAGTTTATTCCAGTCATTGAT 47111 || | || ||||| || || | ||| || || | | || || | ||||||| Sbjct 8808 GCGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTCTCCCAGTCACGTCC 8750 Query 47112 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACAT 47171 |||| ||||| |||||||||||| || |||||||| || || || ||||| || ||||| Sbjct 8749 GTCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAACGATGCTTCGGCTTTCTTGTACAT 8690 Query 47172 ATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCT 47213 | ||| || | | || || |||||||| ||| ||||| Sbjct 8689 CTCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 8648 >seq146431 Length=15796 Score = 196 bits (216), Expect = 7e-45 Identities = 578/881 (66%), Gaps = 10/881 (1%) Strand=Plus/Plus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| || || ||||| || | ||||| |||||||||||||| |||| | || || Sbjct 3836 TTTCTGATAATCACCAACTCTCTTCTCAAAAAAATTAGTTTTCCCTTGAAGCGAAATTAA 3895 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 ||||| ||||||||||||||| | || ||| | || | || | | | Sbjct 3896 CTCCATCCAATCAAACGGATTAGAAGCACCATACACCTTACCGTAGCCAAGCGCACCCAA 3955 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 || ||||| ||||| || || |||||| |||||| | ||| ||||| || | | Sbjct 3956 AAGCCTATCCGCAACAAACTCAATATACTGACTCATCAATCCACGGTTCATCCCAACCAA 4015 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 | ||| || || || | ||||||| ||||| | || ||||| | | || Sbjct 4016 CGCGCACGGAAGCGCGTCGCACACAAACTCTCTCTCAATCGCCACCGCATCGCACACAAT 4075 Query 46578 CGATGTTACTGTTTCCTCACTTGG-TGGATGCATCAAATGTTTAAACATTAAACATGCAA 46636 ||| | ||| ||||| | | | | | | | | | || | || ||||| || | Sbjct 4076 CGACTTCACTCGCTCCTCCGTGAGCTTCGTTCGTAAGA-GAGTATAGATCAAACAAGCGA 4134 Query 46637 AATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCA 46696 ||||||| || | ||||| |||| || ||||||||||| || || | ||||||| Sbjct 4135 AATCACAGTGTAAACCTTCGTCTCGTGAGATCAATTCGTTAGAGAAGGTTAATCCAGGCA 4194 Query 46697 TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTT 46756 | |||||||| || || ||||| || || | ||| || || ||||| || |||| Sbjct 4195 TGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGCTACCTGAGAAGAAGATACCTT 4254 Query 46757 CTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA--CTGGCATCATTATGAATCCACCT 46814 | ||| ||||| || || | || || | || || ||| || ||||| | Sbjct 4255 CAACACAAGCGAAAGCTACGATTCGTTCAGCAAAAGTTTGAGATC--CATCGATCCAAGT 4312 Query 46815 TTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 |||||| | ||| || || |||||||| |||||||| | || || ||| Sbjct 4313 CATAGCCCATTGAGCTTTCTTAGCAACACAAGGAATTGTTTCGACTGCGCGGAATAGATG 4372 Query 46875 GtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATG 46934 | | | || | ||||||| | || ||||| | ||| ||||||||||| || ||||| Sbjct 4373 ATCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGTAAGAGACTATACATCTCAGAATG 4432 Query 46935 AATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTC 46994 || || ||||| || || ||||||||||| || | ||||| | | ||||| || Sbjct 4433 GATATTCTCAATCGCGATTTGAAATCCGTAGAATGCACGCGCTTCGGAGACTTGTACATC 4492 Query 46995 TGTACA-AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATG 47053 || ||| ||||| || | ||| || || ||||| ||| || || || || | Sbjct 4493 TG-ACATGAATCGAGAAGCGAGATTTTCGAGGACGATTCCGTCAGATGCGGCGAAGAAGG 4551 Query 47054 CCAATACATGTTTAATAAAATATTTTTCATCGGTAG-TCAGTTTATTCCAGTCATTGATA 47112 | | || ||||| || || | ||| || || | | || || | ||||||| Sbjct 4552 CGAGGACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCCCAGTCACGTCCG 4610 Query 47113 TCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATA 47172 |||| ||||| |||||||||||| || |||||||| || || || ||||| || ||||| Sbjct 4611 TCTTGTGATAGATCTACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTGTACATC 4670 Query 47173 TTCCATATATCACGATATTGGATCGGAAAAATAACAAATCT 47213 | ||| || | | || || |||||||| ||| ||||| Sbjct 4671 TCCCAGATCTGTGGGTAGTGAATCGGAAACATACAGAATCT 4711 >seq100826 Length=54576 Score = 120 bits (132), Expect = 4e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | ||||| | ||| | || | || ||| |||| ||| || Sbjct 29540 CCTCCTTGATCAACATACCGAGCAGTATCATTGAATACACGCAGCATCGGAACAATACCA 29599 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||| ||||| || ||| ||||||||||||| ||| ||||||||| ||| || Sbjct 29600 TTAGATTCTCCATTAGTGCCACGAATATAACTTCCAGTTGCGCGAATATTATGAATCGAA 29659 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || || || || |||| || |||||| |||||| |||||||| || Sbjct 29660 ACACCAATACCACCAGCTGATTTACTTATAGCAGCACACTCTTTCAAAGTGTCATATATC 29719 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || ||||||||| |||| | |||||| ||||| Sbjct 29720 CCCTCGATGCTATCATCCTTCATACAGACAAGAAAGCAGCT 29760 >seq205226 Length=4968 Score = 111 bits (122), Expect = 2e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | ||||| | |||| | || | || ||| |||| ||| || Sbjct 4507 CCTCCTTGATCAACATACCGCGCAGTATCATTAAACACCCGCAGCATCGGAACAATACCA 4566 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||| ||||| || ||| | |||||||||||| ||| |||||||| ||| || Sbjct 4567 TTAGATTCTCCATTCGTGCCACAGATATAACTTCCAGTTGCGCGAATATTGTGAATCGAA 4626 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || || || || |||| || |||||| |||||| || ||||| || Sbjct 4627 ACACCAATACCACCAGCTGATTTACTTATCGCAGCACACTCTTTCAACGTATCATAAATT 4686 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || ||||||||| |||| | ||||| ||||| Sbjct 4687 CCCTCGATGCTATCATCCTTCATACAGACGAGAAAGCAGCT 4727 Score = 100 bits (110), Expect = 4e-16 Identities = 107/140 (76%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 76499 TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACAT 76558 ||||| | |||||||| | |||||||| || |||||| ||| ||||||| || | Sbjct 4077 TCATACTTAGTATATAATCTCTCAAATTCTTCACCCCAACAATCTGCCAAACCTTGAGCT 4136 Query 76559 TCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCA 76618 ||||| ||||| | || |||||||| |||||| || ||||| | ||| || |||||| Sbjct 4137 TCATTAGGACAAAACAGTGACCACTGTCCATCTGTCTGAACCCTCTCCATGAAAAGATCA 4196 Query 76619 GGTATCCATAGAGCAATAAA 76638 |||||||| ||| | ||||| Sbjct 4197 GGTATCCAAAGA-CCATAAA 4215 >seq161916 Length=396 Score = 95.1 bits (104), Expect = 2e-14 Identities = 149/212 (70%), Gaps = 10/212 (5%) Strand=Plus/Minus Query 75949 TGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAA 76008 |||||| | ||| | | ||||| || | |||||||||| ||| ||||| || ||||| Sbjct 361 TGATCCTTGATAGGATGAATAAGTTCCATATTTTTCAGCTAATTCACAACTAGCTTCTAA 302 Query 76009 CGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATC 76068 |||||| ||||| | || || || || | |||||| | | | | |||| | | Sbjct 301 CGCACCATAATACAAAGTCTCAAATATTTGTAAATTAAGCTTTCGTGATTCAGGTGAGCC 242 Query 76069 AAAAGGATAATGTAAA-----AGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCA 76123 ||| ||| ||| | | ||||||||| |||||| || |||| ||||||||| Sbjct 241 AAATGGA-AATCTCATCATTGAGAATAAAT----CTGCTAACCCTTGAATACCAATACCA 187 Query 76124 ATAGGTCTATGTCTCTTATTGGAAATTTCAGC 76155 ||||| | |||||| ||||| ||| |||| || Sbjct 186 ATAGGACGATGTCTTTTATTAGAAGTTTCTGC 155 >seq231195 Length=5996 Score = 89.7 bits (98), Expect = 7e-13 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||||||||| || || | |||||||||||||||||||||||| | | ||| | || | Sbjct 3377 AGTTCCTGCGTTGAAGAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATTAAGTG 3436 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 ||| |||| || | | || ||||| | ||| || || || ||||| || | ||||| Sbjct 3437 GTAAGTTTTGATTGCAGAGTCAATATCATCCTTG-TGGATGCCAACAGCAACCCTCATCA 3495 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATT-TATTTTCAACAAGTATGATTTTTCC 77170 ||| || ||||| | || ||| ||| | || | ||| || | ||||||| | || Sbjct 3496 GCATGTGTTGAGGCCTCTCAACA-ACTTTTCCTTGGACTTTTAAGAGGTATGATCTCTCA 3554 Query 77171 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 77205 | ||||| || ||||| || | |||| ||| || Sbjct 3555 AGCGTTTTGAATCCAAAGTAATCGTATTCAAAATC 3589 >seq191921 Length=6033 Score = 89.7 bits (98), Expect = 7e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || || || | ||| | ||||| | || | || | ||||||||||| ||| || Sbjct 4104 CCCCCTTGGTCAACATAACGAGCAGTATCGTTGAATACACGCAACATTGGAACAATACCA 4163 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||| || ||||| || || ||| ||||||||| |||||| |||||| || || Sbjct 4164 TTAGACGTTCCATTGGTGCCTCGAATGTAACTTCCAGTTGCACGGATATTATGAACTGAA 4223 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || || || || ||| || | |||||| ||| | ||| ||||| ||| Sbjct 4224 ACACCAATGCCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 4283 Query 76934 CCCTCTATACTATCATCCATCATG 76957 ||||| || || ||||| ||||| Sbjct 4284 CCCTCAATGCTGTCATCTTTCATG 4307 Score = 87.8 bits (96), Expect = 3e-12 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 76085 AGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTG 76144 || |||||||||||||| || || || || |||||||||||||||||||||| | | || Sbjct 2809 AGGATAAATGCATCTGCAAGACCTTGCACACCAATACCAATAGGTCTATGTCGCATGTTT 2868 Query 76145 GAAATTTCAGC-TTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT 76200 || ||| || ||| | ||| || ||||| | ||||||||| || |||||||| Sbjct 2869 GACGTTTTTGCAGTCT-CCACAGGATAGTAATTCACATCTATAATCTTGTTGAGATT 2924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710552949576960