Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_031039.1 Length=251042 Score E Sequences producing significant alignments: (Bits) Value seq158858 226 5e-54 >seq158858 Length=235449 Score = 226 bits (250), Expect = 5e-54 Identities = 535/786 (68%), Gaps = 54/786 (7%) Strand=Plus/Plus Query 16140 AAGGAGAAGACATTATGCTTAATTTTATTGGTACTGGAAGTGCATTTAATACTAAACTTG 16199 |||||||| | || ||||||||||||||| | || ||||||||||| || ||| | Sbjct 193842 AAGGAGAACAAAT---GCTTAATTTTATTGGAAGAGGTAGTGCATTTAACACAAAAGAAG 193898 Query 16200 GAAATAATTCTGCTTTTATTAAAAAGGACAAAACCTTATTTCTAATTGATTGCGGTAGTA 16259 |||| || | |||| |||||||||||| | || ||| ||||||||||||||||| Sbjct 193899 GAAACAACTGCGCTTATATTAAAAAGGATGATCATTTGTTTTTAATTGATTGCGGTAGTT 193958 Query 16260 CAACATTTAGTCGAATGCAAGAAGCTAAATTATTAGATGATGTTGAA--AAGATAGCTGT 16317 ||||||| | || | ||| |||||||| ||||||| | |||| ||| || |||| Sbjct 193959 CAACATTCGGCCGCTTAATTGAATCTAAATTACTAGATGAAG-TGAAGCAAG-TAACTGT 194016 Query 16318 ACTCTTAACTCATACGCATCCTGATCATGTAGGTTCTCTGGGTGACTTAATCTTATATGG 16377 ||| | |||||| |||||||| ||||||||||| || || || ||||| || ||||| Sbjct 194017 ACTACTCACTCATTTACATCCTGACCATGTAGGTTCACTAGGCGATTTAATTTTCTATGG 194076 Query 16378 TTACTATTCAATGGGAAAATTAGGAGAACCAAATGTTACTGTTTATACCCCTAATCTCTT 16437 || |||||||||||||| ||| ||||||| | | || || ||| | || | || Sbjct 194077 GTATTATTCAATGGGAAAGTTAATGGAACCAAGTATAACCGTGTATGCTCCATACGATTT 194136 Query 16438 AAGAATTGAAAATCTACTT-TGGTCACAGGGAGTTTCAACAAAAACATATAATTTAGTTC 16496 || |||| | | |||| | ||| || || ||| |||||| | |||| | Sbjct 194137 AAAGATTGCTGAAC-ACTTAAAAACGATGGGTGTAGAAAGAAATACATATGAACTAGTAC 194195 Query 16497 AATTTTTTGATAAACGTTTTATAAGATTCGGTGCTCAAGA----AATAGGTTTAATTGC- 16551 | || | | | | || ||| || ||| || || || || | | Sbjct 194196 AGTTCTGGG------GAAGTGTAGGAT---GTCATCATGATGATTTTATATTAAACTTCA 194246 Query 16552 -----ATTAGAAGTTGAACATGTTTTAGAATTGAATTGCTTTAGTTATATTATCAA---C 16603 ||| | ||| | ||||| ||||| |||||| | |||||||| || | Sbjct 194247 AACCTATTTG-TGTTAACCATGTAGATGAATTACCTTGCTTCGGATATATTATTAAAATC 194305 Query 16604 T---ATGATG------ATAAAACAATATATTATAGTGGAGATTCAAATGAAATTCCTAAT 16654 | ||||| |||| || || || |||||||||||||| ||||| | ||| ||| Sbjct 194306 TGTATTGATGGTCGCAATAATACGATTTACTATAGTGGAGATTCTAATGATA-TCCCAAT 194364 Query 16655 CAG-ATCATTAAAATGCTAGAGAATGGTAAGATTGATATATTCTATCAAGATACATGTAA 16713 || || | | ||| ||||| ||||| || |||| || |||||||| ||||| | Sbjct 194365 GAGTATTTTACACATGTTAGAGTATGGTGAGCTTGACTACTTTTATCAAGACACATGCAT 194424 Query 16714 AGTAGATTATTCTGGA--AATGTTCACCTATCATTAAAGAAATTAGAATCACT-TATTAA 16770 || ||| || | || |||||||| ||||| |||| |||||||| || | | || || Sbjct 194425 AGCAGACTA--CGAGAAGAATGTTCATCTATCCTTAAGGAAATTAG-ATGAGTCGATCAA 194481 Query 16771 ACCAGAATATAGAGATAAAGTGTATTGTATGCATCTTGATAACGATTTTATTGAAGAAGA 16830 || ||| ||| ||||||| | ||||||||| | ||| | | || ||| || | Sbjct 194482 ACAAGAGGCAAGACATAAAGTCTTCTGTATGCATTTAGATGAAAAGTTCGATGAGCAAAA 194541 Query 16831 AGCATGGGATTTAGGTTTTAAGGTAGTT--GAATCGATAAT-TAATTA-GGAGGAATATA 16886 |||| ||| ||||| ||||| |||||| | | | || ||||| ||||||||||| Sbjct 194542 AGCAAAGGACTTAGGATTTAATGTAGTTTCTATTACAGCATAAAATTAGGGAGGAATATA 194601 Query 16887 TTATGA 16892 ||||| Sbjct 194602 -TATGA 194606 Score = 224 bits (248), Expect = 2e-53 Identities = 917/1417 (65%), Gaps = 55/1417 (4%) Strand=Plus/Minus Query 190919 GAAATACCCTGATCAATATGTTGTTGGATTACTGCAACCATGTCAATAATTTTATTTTGA 190978 |||||||| || || | || |||||||| | |||| | ||||||| || |||| Sbjct 229668 GAAATACCTTGGTCTACGTGAGGTTGGATTTCAGCAATTAAATCAATAACCTTCATTTGG 229609 Query 190979 TCCATATCATATGCTGATTTGTAAGACCATTGAGTTCTACCGTCTAGATATG----GCAT 191034 ||||| ||||| || || |||||||| | ||| || | |||| | |||| Sbjct 229608 TCCATCTCATAAGCAGACTTGTAAGAGAAGAATGTTT----GTTTTGATAAGTAAGGCAT 229553 Query 191035 TGGATAGTATGTTGTAGAGTCATGATATGTTCTGTTTTCAATTCGACTTACAACTGGCAT 191094 ||||||||| || || | | || | || | |||| | | | || | |||||| Sbjct 229552 TGGATAGTAAGTAGTCGCTTTATCAGTTGAACGAGTTTCTACTTTATCAACGATTGGCAT 229493 Query 191095 AATAGATTGAGTTGAATTCTGTACATAACTAATTGA-CTGTG--TAGGTGCAATAGCAAG 191151 | | | || | ||||||||||| | ||| || || | || ||||| ||||| Sbjct 229492 TACGCTTGGTGTAGCGTTCTGTACATATCC---TGAGCTTTGATTCGGAGCAATTGCAAG 229436 Query 191152 TCTATAAGCATGGTATAAACCATTTTCTTTTACTTGTTCTGCTAATTCAGCCCAATCTTC 191211 ||| |||| ||||| ||||||| || ||||| | || ||||||| | Sbjct 229435 TCTGTAAGAGTGGTACAAACCATCACGTTGAACTTGCTTCATTAGACGTTCCCAATCCGC 229376 Query 191212 TTTTGTTGGAACAAAGATTCCCTCAAATAATTCTTTTACTTTTTGACTTCTAGGTGTATA 191271 ||||||||| || || ||||||| || || ||||||| | | |||| | | Sbjct 229375 AGTTGTTGGAATTTGAATACCTTCAAATAGTTTCTTAACTTTTTCAGATTGAGGTA-AGA 229317 Query 191272 ATCATTTTCGATATA-ACGTTT-AAAATAATTACCATTAGCATATTCAGAATCTTCAAAA 191329 || | || | || | || | | ||||||| |||| || ||||| ||||| | || || Sbjct 229316 ATTCTGTT-GTTAAATACTTCTCAAAATAAGTACCTTTTGCATACTCAGATTTCTCGAAT 229258 Query 191330 CGATGGAAtttt--ttatttttCTCAATAGCAATTTCCATA--CTTCGTCTAATACTATG 191385 | | || | | | ||||| ||||||| || || ||| || | || || Sbjct 229257 CCTTCAAAAGATACTCCTCTTTCTT--TAGCAATCTCTGTAGACTTT-TCGA-TAGAGTG 229202 Query 191386 GAAATTCATAATTGCAAAGAATACATTGGCAAAATCTCTAGCTACAGCACTTTCATATGA 191445 | |||| ||||||||||||||| ||||| ||| | || | | ||| |||| Sbjct 229201 ATAGTTCAGCATTGCAAAGAATACACGAGCAAAGTCTTTTGCATCTTCTGATTCGTATGG 229142 Query 191446 AATACTATTTTTAGCAAGGAAACCATGTAAGTTCATTGCGCCTAAACCAACTGAATGGAA 191505 ||| || ||||||||||| ||||| | |||||||| || | ||| ||||| || || Sbjct 229141 AATGAAGTTCTTAGCAAGGAATCCATGAAGGTTCATTGTTCCAAGACCTACTGAGTGTAA 229082 Query 191506 TAGAGCATTTGCTTTTCTTATAGATGGTGCATTTTTGATATCACTCTTATCTGTTACAGA 191565 | |||||| ||||| | | | || || |||| |||| | ||||||||| ||| Sbjct 229081 TGTAGCATTCGCTTTCTTAACACCAGGAGCGTTTTCGATACAAGACTTATCTGTAACATC 229022 Query 191566 TGTTAAAATATCCATTGCAATATCTACAGAATCTTTAAATTTTTTAGTCTCCATTACATT 191625 |||||| || ||||| || ||| ||||| ||||| | | ||| ||||||||||||| Sbjct 229021 TGTTAACATTTCCATACCAGTATGTACAGCTTCTTTTACATCTTTGTTCTCCATTACATT 228962 Query 191626 AACGATATTTAATGATGCAAGGTTACAACTGATTCCCAATCCTAATTCATCTTCTTCTCC 191685 || || |||| ||| | | |||| || ||| | || ||| | | | Sbjct 228961 TACAATGTTTAGTGAACCTAATACACAAGAAAT-----ATCATTCTTGATCCAGTCCGCG 228907 Query 191686 A-----TAATTATTAATTACTGATACTGAACTTA-ACTGCATAATTTCAGTACAAAGGTT 191739 | |||| |||||||| | | | | || |||| | ||| ||||||||||| || Sbjct 228906 ATATTGTAATCGTTAATTAC-GCTTGTCTCCATATACTGAAAAATCTCAGTACAAAGATT 228848 Query 191740 AGAGAATTTAATTTCACCAATTGCTTTTAAAGCATGTTCTTTATTAGCATTTGTTTTGAA 191799 ||| | ||||| | || | ||||||| | ||||| || ||| || |||||||| Sbjct 228847 AGACATTTTAACGCCGCCTAAATCTTTTAATGGATGTTGTTCATTCGCGTTTGTTTTATT 228788 Query 191800 GAACAGATAAGGGTATCCTGATTCTAATTGAGTCATTGCAATTTGATTCATTAGTTTCAT 191859 | | |||||| || || |||||||||||| || |||| || | | | | | ||| Sbjct 228787 CATAAAATAAGGATAGCCAGATTCTAATTGAATCGTTGCGATCTTAACTAACA-TCTCAC 228729 Query 191860 TGGTGATAA---TTCACATACAAATTTCTTAATATTTGGATTATTAACTAATTCATCATA 191916 | ||| | || ||| ||| || | || || |||||| || ||||| Sbjct 228728 GAGCTGTAAGGTCTAACTTAC--GTTTACGAACCATAGGGTTTGCAACTAACTCGTCATA 228671 Query 191917 CATTACATCTAAATCCATCTCATCTAAAGGAATTCCATATTCTTTTTCGACACTATAAGG 191976 | ||||||||||||| || |||| ||| |||||| |||| | ||| || ||| Sbjct 228670 TTTCTCATCTAAATCCATATCGTCTAGGTGAACTCCATAAGCTTTATAAACAGTAGCAGG 228611 Query 191977 AGAGAATGTATAGAACTCTTCTTCTCCTGATTCTAGC--AATTGAATAAATTTATCAGGA 192034 | ||| ||| | |||| || | || ||| ||| | | ||| || ||| || || Sbjct 228610 TGCAAATAGATACATCTCT--TTGTTTTG-TTC-AGCTAACTGGAAGAACTTTCTC-GGT 228556 Query 192035 ACAATAATTCCAGTTGAAAGTGTTTTCATACGAATGCTATCGTCAGCATTGAtttttttA 192094 || | |||| | || | | || ||||| | | || || ||||| | |||||| Sbjct 228555 GTAACTAATCCAATAGATAAAGATTGAATACGTGTCTTCTCATCGGCATTTACTTTTTTT 228496 Query 192095 GTATTTAGGAAATGAATAATATCCCCATGAAAAATATTAAGATAAACAGCTCCTGAGCCT 192154 | || ||||| | ||| | |||| ||| || || || | || ||||||| | || Sbjct 228495 GAATCAAGGAATTCAATTAAGTCCCAATGGAAGATGTTTAAGTATGCAGCTCCGGCACCC 228436 Query 192155 TTGCGTTGACCCATCTGATCAGCATAAGAGAAACTTTGTTCCAATAATTTCATTACAGGA 192214 ||||| || | |||| | |||||||| | |||| ||| |||||||| || Sbjct 228435 GGTCGTTGTCCAAGTTGATTAATGTAAGAGAATGAATCCTCCATTAACTTCATTACCGGT 228376 Query 192215 ATAACACCTTTAGCGGCATTTTCTTCACCATTTACTGGATC--TCCAAGCATTCTTAATT 192272 | ||||| |||| || || || ||| || | | || | | | || | ||||| Sbjct 228375 AATACACCACTAGCAGCGTTCTCAATACCTTTAATAGCTTCAGTACGACCA--CGTAATT 228318 Query 192273 TAGAAACATTTGTTGAAACCCCTCCACCAATTTTAGA 192309 || | || | | || ||||||||||||||||| Sbjct 228317 TACTTAAGTTAATCGCAATTCCTCCACCAATTTTAGA 228281 Score = 136 bits (150), Expect = 6e-27 Identities = 329/489 (67%), Gaps = 23/489 (5%) Strand=Plus/Minus Query 189789 GCTTTAGTATAACCATTTCCTTTTACTGAGAAGAAATCATGGTTTTTAGTAGTTGTATTA 189848 ||||| ||| ||||||||||| || |||||||||||||| | ||| || |||| | Sbjct 230793 GCTTTTACATATCCATTTCCTTTAACAGAGAAGAAATCATGTTGTTTCGTTTTTGTTTGT 230734 Query 189849 AGTCCATTTTCTACAACTGGATTAATATCTTCATCATCAAATAAATGATTAAAACCCAAG 189908 |||||||||| || | |||||| | || ||||||||||| | || | | || || Sbjct 230733 AGTCCATTTTGAACGATTGGATTTACATACTCATCATCAAAGTATTGGTCGTATCCTAAA 230674 Query 189909 TT-ATCAAAAGCATTATTAGCATTATAGCGTAAGAATGCATTTACTTCATCGA------C 189961 || ||| | || ||||| || ||||| |||| ||| ||||||||| |||| | Sbjct 230673 TTCATC-ATTGCTTTATTTGCGTTATAACGTAGGAACTTATTTACTTCTTCGATCATGTC 230615 Query 189962 TAATCCTATTTTAGAATAGATCTCTTCAGTATATTCTAATTCATTTTCATA-AAGATCCA 190020 | ||| | | || ||| | || | || || ||||||||||| | || || || Sbjct 230614 TTTTCCAAGTGGAGCATACACATCATTCGTGTAATCTAATTCATTCGCGTATAACAT-TT 230556 Query 190021 TTAATAGTTCATTTGCCCATTGAACTAATTCTTGCTGTTTA---TTAATATCAAATTTTT 190077 ||||| || | |||| || | ||| |||||||||| | | | || |||| Sbjct 230555 CTAATAATTGAATTGCTTCTTTATCTACCTCTTGCTGTTCAGCTTCAGTAAGTTGGTTTT 230496 Query 190078 CAAATAACTCTTGAGCTAATAATCCCATATATT-GACCATGAACTGACTCATCACGGATA 190136 || | | ||||||||| || || ||| | || || || | || |||||| | | Sbjct 230495 CATAAATCTCTTGAGCGAA-GATACCACCTGTTACCCCGTGGATTGCCTCATCTCTTAAG 230437 Query 190137 ATTAAGTTAATAATTTCACCACTGGCTACCATTTTG----CCTTGTCCAGCTAGGTATAA 190192 ||||| ||| |||||||| | | || || | |||||||| |||| | |||| Sbjct 230436 ATTAATGCAATGATTTCACC----GGAAGCAGTTAGCTGTCCTTGTCCCGCTAAGAATAA 230381 Query 190193 AGGATAGAAGAATCCAGAATAGAATAAGAATGATTCTAACATTACACTGGCTACCATTGC 190252 ||||||||||| || |||||||| || |||||| | ||| ||||| || || Sbjct 230380 CGGATAGAAGAACCCGCTGTAGAATAAAAAGCTTTCTAAGAATACTGATGCTACTATAGC 230321 Query 190253 TTTGTATAA 190261 | ||||| Sbjct 230320 CATATATAA 230312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 800523409501760