Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_031039.1
Length=251042
Score E
Sequences producing significant alignments: (Bits) Value
seq158858 226 5e-54
>seq158858
Length=235449
Score = 226 bits (250), Expect = 5e-54
Identities = 535/786 (68%), Gaps = 54/786 (7%)
Strand=Plus/Plus
Query 16140 AAGGAGAAGACATTATGCTTAATTTTATTGGTACTGGAAGTGCATTTAATACTAAACTTG 16199
|||||||| | || ||||||||||||||| | || ||||||||||| || ||| |
Sbjct 193842 AAGGAGAACAAAT---GCTTAATTTTATTGGAAGAGGTAGTGCATTTAACACAAAAGAAG 193898
Query 16200 GAAATAATTCTGCTTTTATTAAAAAGGACAAAACCTTATTTCTAATTGATTGCGGTAGTA 16259
|||| || | |||| |||||||||||| | || ||| |||||||||||||||||
Sbjct 193899 GAAACAACTGCGCTTATATTAAAAAGGATGATCATTTGTTTTTAATTGATTGCGGTAGTT 193958
Query 16260 CAACATTTAGTCGAATGCAAGAAGCTAAATTATTAGATGATGTTGAA--AAGATAGCTGT 16317
||||||| | || | ||| |||||||| ||||||| | |||| ||| || ||||
Sbjct 193959 CAACATTCGGCCGCTTAATTGAATCTAAATTACTAGATGAAG-TGAAGCAAG-TAACTGT 194016
Query 16318 ACTCTTAACTCATACGCATCCTGATCATGTAGGTTCTCTGGGTGACTTAATCTTATATGG 16377
||| | |||||| |||||||| ||||||||||| || || || ||||| || |||||
Sbjct 194017 ACTACTCACTCATTTACATCCTGACCATGTAGGTTCACTAGGCGATTTAATTTTCTATGG 194076
Query 16378 TTACTATTCAATGGGAAAATTAGGAGAACCAAATGTTACTGTTTATACCCCTAATCTCTT 16437
|| |||||||||||||| ||| ||||||| | | || || ||| | || | ||
Sbjct 194077 GTATTATTCAATGGGAAAGTTAATGGAACCAAGTATAACCGTGTATGCTCCATACGATTT 194136
Query 16438 AAGAATTGAAAATCTACTT-TGGTCACAGGGAGTTTCAACAAAAACATATAATTTAGTTC 16496
|| |||| | | |||| | ||| || || ||| |||||| | |||| |
Sbjct 194137 AAAGATTGCTGAAC-ACTTAAAAACGATGGGTGTAGAAAGAAATACATATGAACTAGTAC 194195
Query 16497 AATTTTTTGATAAACGTTTTATAAGATTCGGTGCTCAAGA----AATAGGTTTAATTGC- 16551
| || | | | | || ||| || ||| || || || || | |
Sbjct 194196 AGTTCTGGG------GAAGTGTAGGAT---GTCATCATGATGATTTTATATTAAACTTCA 194246
Query 16552 -----ATTAGAAGTTGAACATGTTTTAGAATTGAATTGCTTTAGTTATATTATCAA---C 16603
||| | ||| | ||||| ||||| |||||| | |||||||| || |
Sbjct 194247 AACCTATTTG-TGTTAACCATGTAGATGAATTACCTTGCTTCGGATATATTATTAAAATC 194305
Query 16604 T---ATGATG------ATAAAACAATATATTATAGTGGAGATTCAAATGAAATTCCTAAT 16654
| ||||| |||| || || || |||||||||||||| ||||| | ||| |||
Sbjct 194306 TGTATTGATGGTCGCAATAATACGATTTACTATAGTGGAGATTCTAATGATA-TCCCAAT 194364
Query 16655 CAG-ATCATTAAAATGCTAGAGAATGGTAAGATTGATATATTCTATCAAGATACATGTAA 16713
|| || | | ||| ||||| ||||| || |||| || |||||||| ||||| |
Sbjct 194365 GAGTATTTTACACATGTTAGAGTATGGTGAGCTTGACTACTTTTATCAAGACACATGCAT 194424
Query 16714 AGTAGATTATTCTGGA--AATGTTCACCTATCATTAAAGAAATTAGAATCACT-TATTAA 16770
|| ||| || | || |||||||| ||||| |||| |||||||| || | | || ||
Sbjct 194425 AGCAGACTA--CGAGAAGAATGTTCATCTATCCTTAAGGAAATTAG-ATGAGTCGATCAA 194481
Query 16771 ACCAGAATATAGAGATAAAGTGTATTGTATGCATCTTGATAACGATTTTATTGAAGAAGA 16830
|| ||| ||| ||||||| | ||||||||| | ||| | | || ||| || |
Sbjct 194482 ACAAGAGGCAAGACATAAAGTCTTCTGTATGCATTTAGATGAAAAGTTCGATGAGCAAAA 194541
Query 16831 AGCATGGGATTTAGGTTTTAAGGTAGTT--GAATCGATAAT-TAATTA-GGAGGAATATA 16886
|||| ||| ||||| ||||| |||||| | | | || ||||| |||||||||||
Sbjct 194542 AGCAAAGGACTTAGGATTTAATGTAGTTTCTATTACAGCATAAAATTAGGGAGGAATATA 194601
Query 16887 TTATGA 16892
|||||
Sbjct 194602 -TATGA 194606
Score = 224 bits (248), Expect = 2e-53
Identities = 917/1417 (65%), Gaps = 55/1417 (4%)
Strand=Plus/Minus
Query 190919 GAAATACCCTGATCAATATGTTGTTGGATTACTGCAACCATGTCAATAATTTTATTTTGA 190978
|||||||| || || | || |||||||| | |||| | ||||||| || ||||
Sbjct 229668 GAAATACCTTGGTCTACGTGAGGTTGGATTTCAGCAATTAAATCAATAACCTTCATTTGG 229609
Query 190979 TCCATATCATATGCTGATTTGTAAGACCATTGAGTTCTACCGTCTAGATATG----GCAT 191034
||||| ||||| || || |||||||| | ||| || | |||| | ||||
Sbjct 229608 TCCATCTCATAAGCAGACTTGTAAGAGAAGAATGTTT----GTTTTGATAAGTAAGGCAT 229553
Query 191035 TGGATAGTATGTTGTAGAGTCATGATATGTTCTGTTTTCAATTCGACTTACAACTGGCAT 191094
||||||||| || || | | || | || | |||| | | | || | ||||||
Sbjct 229552 TGGATAGTAAGTAGTCGCTTTATCAGTTGAACGAGTTTCTACTTTATCAACGATTGGCAT 229493
Query 191095 AATAGATTGAGTTGAATTCTGTACATAACTAATTGA-CTGTG--TAGGTGCAATAGCAAG 191151
| | | || | ||||||||||| | ||| || || | || ||||| |||||
Sbjct 229492 TACGCTTGGTGTAGCGTTCTGTACATATCC---TGAGCTTTGATTCGGAGCAATTGCAAG 229436
Query 191152 TCTATAAGCATGGTATAAACCATTTTCTTTTACTTGTTCTGCTAATTCAGCCCAATCTTC 191211
||| |||| ||||| ||||||| || ||||| | || ||||||| |
Sbjct 229435 TCTGTAAGAGTGGTACAAACCATCACGTTGAACTTGCTTCATTAGACGTTCCCAATCCGC 229376
Query 191212 TTTTGTTGGAACAAAGATTCCCTCAAATAATTCTTTTACTTTTTGACTTCTAGGTGTATA 191271
||||||||| || || ||||||| || || ||||||| | | |||| | |
Sbjct 229375 AGTTGTTGGAATTTGAATACCTTCAAATAGTTTCTTAACTTTTTCAGATTGAGGTA-AGA 229317
Query 191272 ATCATTTTCGATATA-ACGTTT-AAAATAATTACCATTAGCATATTCAGAATCTTCAAAA 191329
|| | || | || | || | | ||||||| |||| || ||||| ||||| | || ||
Sbjct 229316 ATTCTGTT-GTTAAATACTTCTCAAAATAAGTACCTTTTGCATACTCAGATTTCTCGAAT 229258
Query 191330 CGATGGAAtttt--ttatttttCTCAATAGCAATTTCCATA--CTTCGTCTAATACTATG 191385
| | || | | | ||||| ||||||| || || ||| || | || ||
Sbjct 229257 CCTTCAAAAGATACTCCTCTTTCTT--TAGCAATCTCTGTAGACTTT-TCGA-TAGAGTG 229202
Query 191386 GAAATTCATAATTGCAAAGAATACATTGGCAAAATCTCTAGCTACAGCACTTTCATATGA 191445
| |||| ||||||||||||||| ||||| ||| | || | | ||| ||||
Sbjct 229201 ATAGTTCAGCATTGCAAAGAATACACGAGCAAAGTCTTTTGCATCTTCTGATTCGTATGG 229142
Query 191446 AATACTATTTTTAGCAAGGAAACCATGTAAGTTCATTGCGCCTAAACCAACTGAATGGAA 191505
||| || ||||||||||| ||||| | |||||||| || | ||| ||||| || ||
Sbjct 229141 AATGAAGTTCTTAGCAAGGAATCCATGAAGGTTCATTGTTCCAAGACCTACTGAGTGTAA 229082
Query 191506 TAGAGCATTTGCTTTTCTTATAGATGGTGCATTTTTGATATCACTCTTATCTGTTACAGA 191565
| |||||| ||||| | | | || || |||| |||| | ||||||||| |||
Sbjct 229081 TGTAGCATTCGCTTTCTTAACACCAGGAGCGTTTTCGATACAAGACTTATCTGTAACATC 229022
Query 191566 TGTTAAAATATCCATTGCAATATCTACAGAATCTTTAAATTTTTTAGTCTCCATTACATT 191625
|||||| || ||||| || ||| ||||| ||||| | | ||| |||||||||||||
Sbjct 229021 TGTTAACATTTCCATACCAGTATGTACAGCTTCTTTTACATCTTTGTTCTCCATTACATT 228962
Query 191626 AACGATATTTAATGATGCAAGGTTACAACTGATTCCCAATCCTAATTCATCTTCTTCTCC 191685
|| || |||| ||| | | |||| || ||| | || ||| | | |
Sbjct 228961 TACAATGTTTAGTGAACCTAATACACAAGAAAT-----ATCATTCTTGATCCAGTCCGCG 228907
Query 191686 A-----TAATTATTAATTACTGATACTGAACTTA-ACTGCATAATTTCAGTACAAAGGTT 191739
| |||| |||||||| | | | | || |||| | ||| ||||||||||| ||
Sbjct 228906 ATATTGTAATCGTTAATTAC-GCTTGTCTCCATATACTGAAAAATCTCAGTACAAAGATT 228848
Query 191740 AGAGAATTTAATTTCACCAATTGCTTTTAAAGCATGTTCTTTATTAGCATTTGTTTTGAA 191799
||| | ||||| | || | ||||||| | ||||| || ||| || ||||||||
Sbjct 228847 AGACATTTTAACGCCGCCTAAATCTTTTAATGGATGTTGTTCATTCGCGTTTGTTTTATT 228788
Query 191800 GAACAGATAAGGGTATCCTGATTCTAATTGAGTCATTGCAATTTGATTCATTAGTTTCAT 191859
| | |||||| || || |||||||||||| || |||| || | | | | | |||
Sbjct 228787 CATAAAATAAGGATAGCCAGATTCTAATTGAATCGTTGCGATCTTAACTAACA-TCTCAC 228729
Query 191860 TGGTGATAA---TTCACATACAAATTTCTTAATATTTGGATTATTAACTAATTCATCATA 191916
| ||| | || ||| ||| || | || || |||||| || |||||
Sbjct 228728 GAGCTGTAAGGTCTAACTTAC--GTTTACGAACCATAGGGTTTGCAACTAACTCGTCATA 228671
Query 191917 CATTACATCTAAATCCATCTCATCTAAAGGAATTCCATATTCTTTTTCGACACTATAAGG 191976
| ||||||||||||| || |||| ||| |||||| |||| | ||| || |||
Sbjct 228670 TTTCTCATCTAAATCCATATCGTCTAGGTGAACTCCATAAGCTTTATAAACAGTAGCAGG 228611
Query 191977 AGAGAATGTATAGAACTCTTCTTCTCCTGATTCTAGC--AATTGAATAAATTTATCAGGA 192034
| ||| ||| | |||| || | || ||| ||| | | ||| || ||| || ||
Sbjct 228610 TGCAAATAGATACATCTCT--TTGTTTTG-TTC-AGCTAACTGGAAGAACTTTCTC-GGT 228556
Query 192035 ACAATAATTCCAGTTGAAAGTGTTTTCATACGAATGCTATCGTCAGCATTGAtttttttA 192094
|| | |||| | || | | || ||||| | | || || ||||| | ||||||
Sbjct 228555 GTAACTAATCCAATAGATAAAGATTGAATACGTGTCTTCTCATCGGCATTTACTTTTTTT 228496
Query 192095 GTATTTAGGAAATGAATAATATCCCCATGAAAAATATTAAGATAAACAGCTCCTGAGCCT 192154
| || ||||| | ||| | |||| ||| || || || | || ||||||| | ||
Sbjct 228495 GAATCAAGGAATTCAATTAAGTCCCAATGGAAGATGTTTAAGTATGCAGCTCCGGCACCC 228436
Query 192155 TTGCGTTGACCCATCTGATCAGCATAAGAGAAACTTTGTTCCAATAATTTCATTACAGGA 192214
||||| || | |||| | |||||||| | |||| ||| |||||||| ||
Sbjct 228435 GGTCGTTGTCCAAGTTGATTAATGTAAGAGAATGAATCCTCCATTAACTTCATTACCGGT 228376
Query 192215 ATAACACCTTTAGCGGCATTTTCTTCACCATTTACTGGATC--TCCAAGCATTCTTAATT 192272
| ||||| |||| || || || ||| || | | || | | | || | |||||
Sbjct 228375 AATACACCACTAGCAGCGTTCTCAATACCTTTAATAGCTTCAGTACGACCA--CGTAATT 228318
Query 192273 TAGAAACATTTGTTGAAACCCCTCCACCAATTTTAGA 192309
|| | || | | || |||||||||||||||||
Sbjct 228317 TACTTAAGTTAATCGCAATTCCTCCACCAATTTTAGA 228281
Score = 136 bits (150), Expect = 6e-27
Identities = 329/489 (67%), Gaps = 23/489 (5%)
Strand=Plus/Minus
Query 189789 GCTTTAGTATAACCATTTCCTTTTACTGAGAAGAAATCATGGTTTTTAGTAGTTGTATTA 189848
||||| ||| ||||||||||| || |||||||||||||| | ||| || |||| |
Sbjct 230793 GCTTTTACATATCCATTTCCTTTAACAGAGAAGAAATCATGTTGTTTCGTTTTTGTTTGT 230734
Query 189849 AGTCCATTTTCTACAACTGGATTAATATCTTCATCATCAAATAAATGATTAAAACCCAAG 189908
|||||||||| || | |||||| | || ||||||||||| | || | | || ||
Sbjct 230733 AGTCCATTTTGAACGATTGGATTTACATACTCATCATCAAAGTATTGGTCGTATCCTAAA 230674
Query 189909 TT-ATCAAAAGCATTATTAGCATTATAGCGTAAGAATGCATTTACTTCATCGA------C 189961
|| ||| | || ||||| || ||||| |||| ||| ||||||||| |||| |
Sbjct 230673 TTCATC-ATTGCTTTATTTGCGTTATAACGTAGGAACTTATTTACTTCTTCGATCATGTC 230615
Query 189962 TAATCCTATTTTAGAATAGATCTCTTCAGTATATTCTAATTCATTTTCATA-AAGATCCA 190020
| ||| | | || ||| | || | || || ||||||||||| | || || ||
Sbjct 230614 TTTTCCAAGTGGAGCATACACATCATTCGTGTAATCTAATTCATTCGCGTATAACAT-TT 230556
Query 190021 TTAATAGTTCATTTGCCCATTGAACTAATTCTTGCTGTTTA---TTAATATCAAATTTTT 190077
||||| || | |||| || | ||| |||||||||| | | | || ||||
Sbjct 230555 CTAATAATTGAATTGCTTCTTTATCTACCTCTTGCTGTTCAGCTTCAGTAAGTTGGTTTT 230496
Query 190078 CAAATAACTCTTGAGCTAATAATCCCATATATT-GACCATGAACTGACTCATCACGGATA 190136
|| | | ||||||||| || || ||| | || || || | || |||||| | |
Sbjct 230495 CATAAATCTCTTGAGCGAA-GATACCACCTGTTACCCCGTGGATTGCCTCATCTCTTAAG 230437
Query 190137 ATTAAGTTAATAATTTCACCACTGGCTACCATTTTG----CCTTGTCCAGCTAGGTATAA 190192
||||| ||| |||||||| | | || || | |||||||| |||| | ||||
Sbjct 230436 ATTAATGCAATGATTTCACC----GGAAGCAGTTAGCTGTCCTTGTCCCGCTAAGAATAA 230381
Query 190193 AGGATAGAAGAATCCAGAATAGAATAAGAATGATTCTAACATTACACTGGCTACCATTGC 190252
||||||||||| || |||||||| || |||||| | ||| ||||| || ||
Sbjct 230380 CGGATAGAAGAACCCGCTGTAGAATAAAAAGCTTTCTAAGAATACTGATGCTACTATAGC 230321
Query 190253 TTTGTATAA 190261
| |||||
Sbjct 230320 CATATATAA 230312
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 800523409501760
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