Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_031047.1 Length=170770 Score E Sequences producing significant alignments: (Bits) Value seq26767 199 4e-46 seq249645 118 1e-21 seq127984 86.0 7e-12 >seq26767 Length=1149 Score = 199 bits (220), Expect = 4e-46 Identities = 315/450 (70%), Gaps = 6/450 (1%) Strand=Plus/Minus Query 151964 CGTTTTTATGAAGCAGTATCTACTCGACAGATTTCATTGCCAACTCCTATTATGGCTGGT 152023 ||||||||| | || | || ||| | ||||| || || || || |||||| |||| Sbjct 479 CGTTTTTATAATGCCATTTCAACTTTCAAAATTTCTTTACCGACACCAATTATGTCTGGA 420 Query 152024 TGTCGTACTCCTACTCGACAGTTCAGTTCATGCGTTGTTATTGAGGCAGGAGATTCGCTG 152083 | | |||||||||||||| || || ||||| ||| | ||||| | ||| || Sbjct 419 GTTAGAACTCCTACTCGACAATTTAGCTCATGTGTTTTAATTGAATGTGATGATAATCTA 360 Query 152084 AAGTCTATCAATAAGGCTTCTGCT---TCAATTGTTGAATATATCTCCAAACGAGCTGGA 152140 | ||||| ||| ||| || || || ||||| ||||| | || ||||||| ||| Sbjct 359 GATTCTAT---TAACGCTACTACTAGTTCTATTGTAAAATATGTTTCTCAACGAGCAGGA 303 Query 152141 ATCGGCATTAACGTTGGTATGATTCGTGCCGAAGGTTCTAAGATTGGCATGGGTGAAGTA 152200 || || ||||| | ||| | |||||||| | |||| | ||| | | || |||| | Sbjct 302 ATTGGTATTAATGCTGGAAAAATTCGTGCAGTAGGTAGTCCTATTAGAAATGGCGAAGCA 243 Query 152201 CGCCATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGACTGCTGTTAAATCATGCTCA 152260 ||||||||| ||||||||||| ||||||||||| | |||||| ||||| || || Sbjct 242 TTTCATACTGGTTGTATTCCTTTTTATAAACATTTTCAAAGTGCTGTAAAATCCTGTTCT 183 Query 152261 CAGGGTGGAATTCGTGGCGGCGCTGCTACTGCTTATTATCCTATTTGGCATTTGGAAGTT 152320 || || ||| || | || || || || ||| | |||||| || |||||||| ||| || Sbjct 182 CAAGGAGGAGTTAGAGGTGGAGCGGCAACTATATTTTATCCAATATGGCATTTTGAAATT 123 Query 152321 GAAAATCTTCTCGTTTTGAAAAATAACAAAGGCGTAGAAGAAAACCGCATCCGTCATATG 152380 |||| | | | ||||| |||||||| | ||| | |||||||| | | ||||| | Sbjct 122 GAAAGTTTATTAGTTTTAAAAAATAATAGGGGCATTGAAGAAAATAGAGTACGTCACGTT 63 Query 152381 GATTATAGTGTTCAGCTGAATGATTTGATG 152410 |||||| || || | ||| | |||||| Sbjct 62 GATTATGCAGTACAAATTAATAAATTGATG 33 >seq249645 Length=476466 Score = 118 bits (130), Expect = 1e-21 Identities = 181/257 (70%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 152132 CGAGCTGGAATCGGCATTAACGTTGGTATGATTCGTGCCGAAGGTT---CTAAGATTGGC 152188 || ||||| |||||||| |||| ||| || |||||| ||| ||| |||| Sbjct 264688 CGTGCTGGTATCGGCATCAACGCAGGTCGTATCCGTGCCCTTGGTAGCCCTATCCGTGGC 264747 Query 152189 ATGGGTGAAGTACGCCATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGACTGCTGTT 152248 ||||||| || |||||||| ||||||||||| ||| || || || || ||| Sbjct 264748 ---GGTGAAGCACAGCATACTGGCTGTATTCCTTTTTATAAATTGTTCCAAACGGCCGTT 264804 Query 152249 AAATCATGCTCACAGGGTGGAATTCGTGGCGGCGCTGCTACTGCTTATTATCCTATTTGG 152308 |||| |||||||| ||||| | |||||||| ||||| || | || || | ||| Sbjct 264805 AAATGCTGCTCACAAGGTGGCGTACGTGGCGGTGCTGCGACGTTGTTCTACCCACTATGG 264864 Query 152309 CATTTGGAAGTTGAAAATCTTCTCGTTTTGAAAAATAACAAAGGCGTAGAAGAAAACCGC 152368 ||||| |||||||| | || || | ||||||||| || || ||||| ||||| Sbjct 264865 CATTTAGAAGTTGAGTCATTACTGGTACTCAAAAATAACCGCGGTGTTGAAGACAACCGT 264924 Query 152369 ATCCGTCATATGGATTA 152385 ||||||||||||| || Sbjct 264925 GTCCGTCATATGGACTA 264941 >seq127984 Length=21361 Score = 86.0 bits (94), Expect = 7e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 1120 TAAATTTGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAAT 1179 |||||| |||||| | | ||||||||||||| ||||||||| ||||||| ||||||| | Sbjct 19915 TAAATTGGAGCGGGTGAAGAGAATCGAACTCTCATCATCAGCTTGGAAGGCTGAGGTTTT 19856 Query 1180 ACCATTATACGATATCCGCAAA 1201 |||| || || | | ||||||| Sbjct 19855 ACCACTAAACTACACCCGCAAA 19834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544511046542400