Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_031056.1 Length=157501 Score E Sequences producing significant alignments: (Bits) Value seq158858 717 0.0 seq82942 98.7 1e-15 seq149378 84.2 2e-11 >seq158858 Length=235449 Score = 717 bits (794), Expect = 0.0 Identities = 765/1007 (76%), Gaps = 5/1007 (0%) Strand=Plus/Minus Query 29647 TACATAGTCTCCGTCTACTGTCATTTTGTCTAAGTCCTCTTCGATGTGTACTGGATCGAA 29706 |||| | ||||| || || |||||| | | || || |||| | | |||| | || Sbjct 172575 TACAAATTCTCCATCAACAAGCATTTTATGTGTTTCTTCAACGATATTTGCTGGGTTAAA 172516 Query 29707 --TGATAATGAGAAGTAATCCCCTGCACCCATGTATCCGTCTAGACGAACCTCTTCACTG 29764 | ||| |||||||||||||| || ||| || || || ||| | ||||||| Sbjct 172515 ACTCATA--GAGAAGTAATCCCCACCATGCATATAACCACTAAGTTGAATCGTTTCACTG 172458 Query 29765 AATAGGTTAATTTCTTTACCTTTCAGGTCGAATGACTTACCGTTTCCTAGTGTAACTTTC 29824 || || || || |||| | | | |||| || |||||||| | || | ||||| Sbjct 172457 AACAGATTGATACTCTTACTTCTTAATTCGATAGATTTACCGTTATCAAGAATCACTTTA 172398 Query 29825 ACGTTGTAACGTTGTGTATCTGTAGCCAGGATGTTCAAGTCCCCGATAGCAGAACGGAAC 29884 |||| || ||||||| |||||| | | ||| || || || || |||||||||||||| Sbjct 172397 ACGTCATATCGTTGTGAATCTGTTGTTAAGATATTTAAATCACCAATAGCAGAACGGAAT 172338 Query 29885 GTGTATCCTTCATTTAACTCGAATGCAATGGCACGTAGGCTATCGTAGTTTAACTTCACT 29944 || || || |||||||| || || ||||| ||||||| ||| ||||| |||||||| || Sbjct 172337 GTATAACCCTCATTTAATTCAAACGCAATCGCACGTAAGCTGTCGTAATTTAACTTTACA 172278 Query 29945 CGGTTTGCGAATGAAACAACTTGCTTAATTTCCCCGTGATATTGCTTGTCCAATTTGTCC 30004 || ||||| |||| ||||| ||||| ||||| || ||||| || | | | |||||| Sbjct 172277 CGATTTGCAAATGCTACAACATGCTTGATTTCACCATGATACTGTTCAGCAATTTTGTCT 172218 Query 30005 CCTAAGTAGATTTCAATTTCAGAAGCAGATGGGTAGTCGAAACGAATATGGTAATGGAAT 30064 || ||||||||||||||||| ||||| ||| || || || || ||||||||||||||| Sbjct 172217 TTTAGGTAGATTTCAATTTCAGTAGCAGTTGGATAATCAAATCGGATATGGTAATGGAAT 172158 Query 30065 CGACCAGGACGACTTAACATAAACTCGTTCACTCTGTGCAGGTCGTTGACTGTAATAGCG 30124 ||||||||||| |||||||||||||| || || | | || ||||| || ||||| || Sbjct 172157 CGACCAGGACGGCTTAACATAAACTCATTTACCTTATTAAGATCGTTTACCGTAATCGCA 172098 Query 30125 TACATACGTTTCTTCTGAGACGTACCATCAAATAACCCTAGTAAACTATCTTGCTTCTCT 30184 || ||||||||||||||||| ||||||||||||||||| ||||| | || || || ||| Sbjct 172097 TAGATACGTTTCTTCTGAGAAGTACCATCAAATAACCCCAGTAAGTTTTCCTGTTTTTCT 172038 Query 30185 GCTTTATCGTCACGAGGGTTGAACATCTTCTCAAACTCATCGAATACGATTAATGCTTCT 30244 |||| || | |||||| ||||||||||| ||||||||||| || | |||||||||||| Sbjct 172037 GCTTCTTCATTACGAGGATTGAACATCTTTTCAAACTCATCCAAGATAATTAATGCTTCT 171978 Query 30245 TGGTCAATCTCTTCAATGAAGTCTGCGATACCTGGGAATGCTTTCGTAACCATGATTACA 30304 |||||||| | ||||||||| || || || ||||||||||| || |||||||| || || Sbjct 171977 TGGTCAATTTGTTCAATGAAATCAGCAATCCCTGGGAATGCCTTTGTAACCATAATAACC 171918 Query 30305 GGGATACCACGAGAAACTACCGCTTCTGCAATCAATTGTACGAACATAGATTTACCCATA 30364 ||||| | ||| || ||||||||||| | ||| || ||||||||||||||||| Sbjct 171917 GGGATTTCCTTTTTAACAACTGCTTCTGCAATAAGTTGAACAAACATAGATTTACCCATT 171858 Query 30365 CCTTTGTGGCCGCTTAGAATGATCCCTAGACTACGCTCGAACTTGTCATACGATTTTAGT 30424 ||||||| || || | || | |||| ||||| || || || ||||| ||||||| | Sbjct 171857 CCTTTGTTACCACTCAAGATAAGACCTAAGCTACGTTCAAATTTTTCATATGATTTTAAT 171798 Query 30425 ACCTTTCCAATCTTCTCTGCGTGGCTACCGTAAATCTTCTCTTCTTTTGATACAAAGTTA 30484 || || ||| || |||| ||| || || |||||||| |||| ||||| |||||||| Sbjct 171797 ACTTTATTAATTTTTTCTGGGTGACTTCCATAAATCTTTGCTTCCGTTGATTCAAAGTTA 171738 Query 30485 TCCATCTTTTCTAAAGAGAATCCTTGCATTGGGTGGAAATCTACCTTATATGTAGCAGCA 30544 || ||||| ||||||||||| ||| |||| | ||| ||||| || ||||||||||| Sbjct 171737 TCAATCTTCTCTAAAGAGAAACCTGATCTTGGATTGAATTCTACTTTGTATGTAGCAGCT 171678 Query 30545 GGTAATTCATCGTAAGTTTTTAAGTCATCTCCGTAGATTTTAAATGTGCTTCCAAAGTTT 30604 |||| || || ||||||||||||||||| ||||| |||||| | || ||||| ||||| Sbjct 171677 GGTAGTTTGTCATAAGTTTTTAAGTCATCACCGTAAATTTTATAAGTACTTCCGAAGTTA 171618 Query 30605 ACAATTTTCATAATTAATTATCTCCCTTTTATATGGttttttttATT 30651 | ||||||||| ||| | |||| |||| | | ||| ||||| || Sbjct 171617 ATAATTTTCAT-TTTATATTGCTCCTTTTTCTCTCGTTGTTTTTTTT 171572 Score = 201 bits (222), Expect = 1e-46 Identities = 434/639 (68%), Gaps = 20/639 (3%) Strand=Plus/Minus Query 78070 TTGATAGCCATTAACATCCCATTAATTTTGTTATAATCGGGTTTCTCAGGCAGCTTCGAG 78129 |||||| ||||||||||| ||| || |||| |||||| | ||| | || |||| || Sbjct 233172 TTGATATCCATTAACATCTTATTGATCTTGTCATAATCAGCTTTTGCCGGAAGCTCTGAT 233113 Query 78130 TGTTCGTGCGCTAACTG-TAGTTTTTCATCGTAATCTGCAACAAGTGCTAGTGCCTGTTC 78188 | || | ||| ||| || || | ||||| | |||| | | ||| || | ||| Sbjct 233112 TTCTCATAGGCTG-CTGCTAATTCATTGTCGTACATTTCAACCATTTCTAAAGCTTCTTC 233054 Query 78189 ACGAGTGTAATCTCCATTTCGGCAACCTAGTAAGAAGT-CACGTTCAGGACGGTATGTAC 78247 |||||| | ||||| || ||| ||| || ||||| | || | |||||| || |||| Sbjct 233053 GAAAGTGTATTTACCATTACGACAATCTAATA-GAAGTTCTCGGTTAGGACGATACGTAC 232995 Query 78248 TGTAATCACCTGTGTTTAAGATTTCGATTGCAGATAACTGTAATCTCACACCTTGCATAA 78307 |||||| |||||| | |||||||| ||||| | |||||| | || ||||||| Sbjct 232994 TGTAATTACCTGTCTCCAAGATTTCTGTTGCACTTGTTAGTAATCGGATACTGTGCATAA 232935 Query 78308 AGTTCTTAGTATCGTAACCAAACTCCTCGACCAACTCTTGGCGACCTGCCCCGTTCTTGA 78367 || ||| |||||||| ||| | ||| || || | | |||| ||||| | Sbjct 232934 AGAACTTTGTATCGTAGCCATGAGCACCGATTAAGTCACGTCTGCCTGTTCCGTTTGAGT 232875 Query 78368 TTTTGTTCGTTAA-----GGATC-GTG----TG--TAGCCACCAAACTTCGTGA--TGAT 78413 | || ||| ||| |||| ||| || || ||||| || ||| | | || Sbjct 232874 TCTTATTCTTTAGCTTTTGGATTTGTGAATTTGCATATCCACCGAA--TCGGTACTTAAT 232817 Query 78414 TTGTTTTGACAGGAATAGGTGTCGGTTGTCACGTAGGACTTGTCCAAGTTCAGTCAAGAT 78473 | |||||| | ||||| ||| ||||| || || || |||||| ||| ||| | | Sbjct 232816 GTTTTTTGATAAGAATAAGTGACGGTTATCGATTAAGATTTGTCCGAGTGGAGTAACCTT 232757 Query 78474 GATATAGTCTTCTTCTCTAGCAAACAGTACCTCGATGTTATTTGGAACGCCTAGCATAGC 78533 ||| || || || | | |||| || | |||||||||||| || |||| | ||||||| Sbjct 232756 GATGTAATCCTCCGGACGAACAAATAGGATCTCGATGTTATTAGGTACGCTTTGCATAGC 232697 Query 78534 ATCTTTTACGAACTTACTTACATGAATGATATTGATGTCTACGTCATCCTTCGTATTCTT 78593 |||| | || ||||| | ||||||||||| || | || || ||||||||||| || | Sbjct 232696 ATCTCTAACAAACTTGTTCACATGAATGATGTTTACATCGACATCATCCTTCGTGTTTCT 232637 Query 78594 GAACGTCTTACCGCCTGTGTTATTGTATTCATTGAATGTTTCTAGCCCTAGAAAGTACTC 78653 ||| | ||||| |||| | ||||| ||||| |||| || | |||| | ||||| Sbjct 232636 GAAGTTTTTACCACCTGATGTGTTGTACTCATTAAATGAATCCAAACCTAAGTAATACTC 232577 Query 78654 CTTAGGTGGGATACAAACTCCTTTGAAGTCCCAATCAGA 78692 |||||||| || || || || ||||| ||| || Sbjct 232576 AACTGGTGGGATGCATACACCCTTATAGTCCTTATCTGA 232538 >seq82942 Length=47844 Score = 98.7 bits (108), Expect = 1e-15 Identities = 282/426 (66%), Gaps = 12/426 (3%) Strand=Plus/Minus Query 8627 AACTACATGCACGATATGAAGATTGCTCAGTTCTATGCGACCCAAAACCGTAAAGCGATG 8686 |||||| |||| || | ||||| || || ||| ||| | | |||||| |||||||| Sbjct 35898 AACTACCTGCATGACTTAAAGATCGCCCAACGCTACGCGGCACTGAACCGTCAAGCGATG 35839 Query 8687 GTAGATGAAATCGTATCTCATATGGGATGGTTAATCACCGACCAATTCACAACGATCCAT 8746 || | ||| | ||| |||| | ||| | |||||| ||||| || Sbjct 35838 ACCGACGTCATCCTGGAAGCAATGAACTGGTCAGCGACCAATCAATTCGATACGATTCAC 35779 Query 8747 AACTACATCGACATGGATGACTTTATCCTACGTAAAGGAGCAGTATCTGCATACAAAGAC 8806 ||||||||||| | || | | || || |||||||| || | || || | || | Sbjct 35778 AACTACATCGATCTCGAGCAGATGATTCTGCGTAAAGGTGCGATTTCAGCGCA---AGCC 35722 Query 8807 GA--AAGACT-TATCGTTCCAATCAACATGCGTGACGGTTCTCTTATCGCAGTAGGTAAA 8863 | ||| | |||| |||| || |||||||| |||||||| || |||| ||| ||| Sbjct 35721 GGTGAAGTCGCTATCATTCCGATGAACATGCGCGACGGTTCACTGATCGTCAAAGGAAAA 35662 Query 8864 GGTAACAGAGATTGGAACTACTCTGCACCACACGGAGCAGGACGACTTATGAGCCGTACA 8923 || || || |||||||| || ||||||||||| |||||||| | ||| ||| | Sbjct 35661 GGCAATCCGGACTGGAACTATTCGGCACCACACGGGGCAGGACGGATCATGTCCCGCTCG 35602 Query 8924 AAAGCCAAAGAGAATATTAAACTAGAA-GACTTTCAAGATACTATGAAGGATGTATGGAC 8982 |||||| | | | | ||| ||| || ||| ||| || ||| |||| || ||| | Sbjct 35601 AAAGCC-TTCAAATCAGTGGACTTGAAGGAATTTGAAGCGACGATGCAGGACGTCTGGTC 35543 Query 8983 AACTTCTGTAG--GTACTAGCACGATTGACGAAGCACCAATGGCATACAAACCAATGGAC 9040 | ||| || | | | |||| ||| || |||| | | |||||||| ||||| Sbjct 35542 GAGTTCGGTCGTCGAATCGACACG--TGATGAGTCACCGTTCGTCTACAAACCGATGGAA 35485 Query 9041 GAGATC 9046 || ||| Sbjct 35484 GAAATC 35479 >seq149378 Length=35185 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 127937 AACGCTCTACTGTTACAGAACCTTCGTACTTTAAGTAAACGTGTTCTTGTGGCATGATAG 127996 |||| || |||| ||| | ||| ||||||||| | |||||||| ||||||||||| | Sbjct 32986 AACGTTCAACTGATACCGTACCCGTATACTTTAAGAATACGTGTTCATGTGGCATGATTG 32927 Query 127997 AACCGATTTGGTATACCCCAGTAGTACCAAAGCTACGCTCTGCTGAGATAGACTGAGCAC 128056 |||| | || || || || ||||| || || || | | | || ||||||| Sbjct 32926 AACCAAGTTCATACACACCTTGGGTACCGAATGAGCGGTCACCAGTTAATGATTGAGCAC 32867 Query 128057 GAGCAATCGGTACGTTCTTAATCATAAAGTATACTGTGTTACCAGTCTGTACCGTTTGGT 128116 || |||| | ||||||||||||| | || | |||||| || | |||||||| | Sbjct 32866 GACCAATAACTTCGTTCTTAATCATGATATAAATACGGTTACCGGTTTCAACCGTTTGCT 32807 Query 128117 TAGTTACAGATGCCATGTAGT 128137 | | | | |||||| |||| Sbjct 32806 TTGCAAGTGTTGCCATATAGT 32786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 502192080475680