Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_031056.1
Length=157501
Score E
Sequences producing significant alignments: (Bits) Value
seq158858 717 0.0
seq82942 98.7 1e-15
seq149378 84.2 2e-11
>seq158858
Length=235449
Score = 717 bits (794), Expect = 0.0
Identities = 765/1007 (76%), Gaps = 5/1007 (0%)
Strand=Plus/Minus
Query 29647 TACATAGTCTCCGTCTACTGTCATTTTGTCTAAGTCCTCTTCGATGTGTACTGGATCGAA 29706
|||| | ||||| || || |||||| | | || || |||| | | |||| | ||
Sbjct 172575 TACAAATTCTCCATCAACAAGCATTTTATGTGTTTCTTCAACGATATTTGCTGGGTTAAA 172516
Query 29707 --TGATAATGAGAAGTAATCCCCTGCACCCATGTATCCGTCTAGACGAACCTCTTCACTG 29764
| ||| |||||||||||||| || ||| || || || ||| | |||||||
Sbjct 172515 ACTCATA--GAGAAGTAATCCCCACCATGCATATAACCACTAAGTTGAATCGTTTCACTG 172458
Query 29765 AATAGGTTAATTTCTTTACCTTTCAGGTCGAATGACTTACCGTTTCCTAGTGTAACTTTC 29824
|| || || || |||| | | | |||| || |||||||| | || | |||||
Sbjct 172457 AACAGATTGATACTCTTACTTCTTAATTCGATAGATTTACCGTTATCAAGAATCACTTTA 172398
Query 29825 ACGTTGTAACGTTGTGTATCTGTAGCCAGGATGTTCAAGTCCCCGATAGCAGAACGGAAC 29884
|||| || ||||||| |||||| | | ||| || || || || ||||||||||||||
Sbjct 172397 ACGTCATATCGTTGTGAATCTGTTGTTAAGATATTTAAATCACCAATAGCAGAACGGAAT 172338
Query 29885 GTGTATCCTTCATTTAACTCGAATGCAATGGCACGTAGGCTATCGTAGTTTAACTTCACT 29944
|| || || |||||||| || || ||||| ||||||| ||| ||||| |||||||| ||
Sbjct 172337 GTATAACCCTCATTTAATTCAAACGCAATCGCACGTAAGCTGTCGTAATTTAACTTTACA 172278
Query 29945 CGGTTTGCGAATGAAACAACTTGCTTAATTTCCCCGTGATATTGCTTGTCCAATTTGTCC 30004
|| ||||| |||| ||||| ||||| ||||| || ||||| || | | | ||||||
Sbjct 172277 CGATTTGCAAATGCTACAACATGCTTGATTTCACCATGATACTGTTCAGCAATTTTGTCT 172218
Query 30005 CCTAAGTAGATTTCAATTTCAGAAGCAGATGGGTAGTCGAAACGAATATGGTAATGGAAT 30064
|| ||||||||||||||||| ||||| ||| || || || || |||||||||||||||
Sbjct 172217 TTTAGGTAGATTTCAATTTCAGTAGCAGTTGGATAATCAAATCGGATATGGTAATGGAAT 172158
Query 30065 CGACCAGGACGACTTAACATAAACTCGTTCACTCTGTGCAGGTCGTTGACTGTAATAGCG 30124
||||||||||| |||||||||||||| || || | | || ||||| || ||||| ||
Sbjct 172157 CGACCAGGACGGCTTAACATAAACTCATTTACCTTATTAAGATCGTTTACCGTAATCGCA 172098
Query 30125 TACATACGTTTCTTCTGAGACGTACCATCAAATAACCCTAGTAAACTATCTTGCTTCTCT 30184
|| ||||||||||||||||| ||||||||||||||||| ||||| | || || || |||
Sbjct 172097 TAGATACGTTTCTTCTGAGAAGTACCATCAAATAACCCCAGTAAGTTTTCCTGTTTTTCT 172038
Query 30185 GCTTTATCGTCACGAGGGTTGAACATCTTCTCAAACTCATCGAATACGATTAATGCTTCT 30244
|||| || | |||||| ||||||||||| ||||||||||| || | ||||||||||||
Sbjct 172037 GCTTCTTCATTACGAGGATTGAACATCTTTTCAAACTCATCCAAGATAATTAATGCTTCT 171978
Query 30245 TGGTCAATCTCTTCAATGAAGTCTGCGATACCTGGGAATGCTTTCGTAACCATGATTACA 30304
|||||||| | ||||||||| || || || ||||||||||| || |||||||| || ||
Sbjct 171977 TGGTCAATTTGTTCAATGAAATCAGCAATCCCTGGGAATGCCTTTGTAACCATAATAACC 171918
Query 30305 GGGATACCACGAGAAACTACCGCTTCTGCAATCAATTGTACGAACATAGATTTACCCATA 30364
||||| | ||| || ||||||||||| | ||| || |||||||||||||||||
Sbjct 171917 GGGATTTCCTTTTTAACAACTGCTTCTGCAATAAGTTGAACAAACATAGATTTACCCATT 171858
Query 30365 CCTTTGTGGCCGCTTAGAATGATCCCTAGACTACGCTCGAACTTGTCATACGATTTTAGT 30424
||||||| || || | || | |||| ||||| || || || ||||| ||||||| |
Sbjct 171857 CCTTTGTTACCACTCAAGATAAGACCTAAGCTACGTTCAAATTTTTCATATGATTTTAAT 171798
Query 30425 ACCTTTCCAATCTTCTCTGCGTGGCTACCGTAAATCTTCTCTTCTTTTGATACAAAGTTA 30484
|| || ||| || |||| ||| || || |||||||| |||| ||||| ||||||||
Sbjct 171797 ACTTTATTAATTTTTTCTGGGTGACTTCCATAAATCTTTGCTTCCGTTGATTCAAAGTTA 171738
Query 30485 TCCATCTTTTCTAAAGAGAATCCTTGCATTGGGTGGAAATCTACCTTATATGTAGCAGCA 30544
|| ||||| ||||||||||| ||| |||| | ||| ||||| || |||||||||||
Sbjct 171737 TCAATCTTCTCTAAAGAGAAACCTGATCTTGGATTGAATTCTACTTTGTATGTAGCAGCT 171678
Query 30545 GGTAATTCATCGTAAGTTTTTAAGTCATCTCCGTAGATTTTAAATGTGCTTCCAAAGTTT 30604
|||| || || ||||||||||||||||| ||||| |||||| | || ||||| |||||
Sbjct 171677 GGTAGTTTGTCATAAGTTTTTAAGTCATCACCGTAAATTTTATAAGTACTTCCGAAGTTA 171618
Query 30605 ACAATTTTCATAATTAATTATCTCCCTTTTATATGGttttttttATT 30651
| ||||||||| ||| | |||| |||| | | ||| ||||| ||
Sbjct 171617 ATAATTTTCAT-TTTATATTGCTCCTTTTTCTCTCGTTGTTTTTTTT 171572
Score = 201 bits (222), Expect = 1e-46
Identities = 434/639 (68%), Gaps = 20/639 (3%)
Strand=Plus/Minus
Query 78070 TTGATAGCCATTAACATCCCATTAATTTTGTTATAATCGGGTTTCTCAGGCAGCTTCGAG 78129
|||||| ||||||||||| ||| || |||| |||||| | ||| | || |||| ||
Sbjct 233172 TTGATATCCATTAACATCTTATTGATCTTGTCATAATCAGCTTTTGCCGGAAGCTCTGAT 233113
Query 78130 TGTTCGTGCGCTAACTG-TAGTTTTTCATCGTAATCTGCAACAAGTGCTAGTGCCTGTTC 78188
| || | ||| ||| || || | ||||| | |||| | | ||| || | |||
Sbjct 233112 TTCTCATAGGCTG-CTGCTAATTCATTGTCGTACATTTCAACCATTTCTAAAGCTTCTTC 233054
Query 78189 ACGAGTGTAATCTCCATTTCGGCAACCTAGTAAGAAGT-CACGTTCAGGACGGTATGTAC 78247
|||||| | ||||| || ||| ||| || ||||| | || | |||||| || ||||
Sbjct 233053 GAAAGTGTATTTACCATTACGACAATCTAATA-GAAGTTCTCGGTTAGGACGATACGTAC 232995
Query 78248 TGTAATCACCTGTGTTTAAGATTTCGATTGCAGATAACTGTAATCTCACACCTTGCATAA 78307
|||||| |||||| | |||||||| ||||| | |||||| | || |||||||
Sbjct 232994 TGTAATTACCTGTCTCCAAGATTTCTGTTGCACTTGTTAGTAATCGGATACTGTGCATAA 232935
Query 78308 AGTTCTTAGTATCGTAACCAAACTCCTCGACCAACTCTTGGCGACCTGCCCCGTTCTTGA 78367
|| ||| |||||||| ||| | ||| || || | | |||| ||||| |
Sbjct 232934 AGAACTTTGTATCGTAGCCATGAGCACCGATTAAGTCACGTCTGCCTGTTCCGTTTGAGT 232875
Query 78368 TTTTGTTCGTTAA-----GGATC-GTG----TG--TAGCCACCAAACTTCGTGA--TGAT 78413
| || ||| ||| |||| ||| || || ||||| || ||| | | ||
Sbjct 232874 TCTTATTCTTTAGCTTTTGGATTTGTGAATTTGCATATCCACCGAA--TCGGTACTTAAT 232817
Query 78414 TTGTTTTGACAGGAATAGGTGTCGGTTGTCACGTAGGACTTGTCCAAGTTCAGTCAAGAT 78473
| |||||| | ||||| ||| ||||| || || || |||||| ||| ||| | |
Sbjct 232816 GTTTTTTGATAAGAATAAGTGACGGTTATCGATTAAGATTTGTCCGAGTGGAGTAACCTT 232757
Query 78474 GATATAGTCTTCTTCTCTAGCAAACAGTACCTCGATGTTATTTGGAACGCCTAGCATAGC 78533
||| || || || | | |||| || | |||||||||||| || |||| | |||||||
Sbjct 232756 GATGTAATCCTCCGGACGAACAAATAGGATCTCGATGTTATTAGGTACGCTTTGCATAGC 232697
Query 78534 ATCTTTTACGAACTTACTTACATGAATGATATTGATGTCTACGTCATCCTTCGTATTCTT 78593
|||| | || ||||| | ||||||||||| || | || || ||||||||||| || |
Sbjct 232696 ATCTCTAACAAACTTGTTCACATGAATGATGTTTACATCGACATCATCCTTCGTGTTTCT 232637
Query 78594 GAACGTCTTACCGCCTGTGTTATTGTATTCATTGAATGTTTCTAGCCCTAGAAAGTACTC 78653
||| | ||||| |||| | ||||| ||||| |||| || | |||| | |||||
Sbjct 232636 GAAGTTTTTACCACCTGATGTGTTGTACTCATTAAATGAATCCAAACCTAAGTAATACTC 232577
Query 78654 CTTAGGTGGGATACAAACTCCTTTGAAGTCCCAATCAGA 78692
|||||||| || || || || ||||| ||| ||
Sbjct 232576 AACTGGTGGGATGCATACACCCTTATAGTCCTTATCTGA 232538
>seq82942
Length=47844
Score = 98.7 bits (108), Expect = 1e-15
Identities = 282/426 (66%), Gaps = 12/426 (3%)
Strand=Plus/Minus
Query 8627 AACTACATGCACGATATGAAGATTGCTCAGTTCTATGCGACCCAAAACCGTAAAGCGATG 8686
|||||| |||| || | ||||| || || ||| ||| | | |||||| ||||||||
Sbjct 35898 AACTACCTGCATGACTTAAAGATCGCCCAACGCTACGCGGCACTGAACCGTCAAGCGATG 35839
Query 8687 GTAGATGAAATCGTATCTCATATGGGATGGTTAATCACCGACCAATTCACAACGATCCAT 8746
|| | ||| | ||| |||| | ||| | |||||| ||||| ||
Sbjct 35838 ACCGACGTCATCCTGGAAGCAATGAACTGGTCAGCGACCAATCAATTCGATACGATTCAC 35779
Query 8747 AACTACATCGACATGGATGACTTTATCCTACGTAAAGGAGCAGTATCTGCATACAAAGAC 8806
||||||||||| | || | | || || |||||||| || | || || | || |
Sbjct 35778 AACTACATCGATCTCGAGCAGATGATTCTGCGTAAAGGTGCGATTTCAGCGCA---AGCC 35722
Query 8807 GA--AAGACT-TATCGTTCCAATCAACATGCGTGACGGTTCTCTTATCGCAGTAGGTAAA 8863
| ||| | |||| |||| || |||||||| |||||||| || |||| ||| |||
Sbjct 35721 GGTGAAGTCGCTATCATTCCGATGAACATGCGCGACGGTTCACTGATCGTCAAAGGAAAA 35662
Query 8864 GGTAACAGAGATTGGAACTACTCTGCACCACACGGAGCAGGACGACTTATGAGCCGTACA 8923
|| || || |||||||| || ||||||||||| |||||||| | ||| ||| |
Sbjct 35661 GGCAATCCGGACTGGAACTATTCGGCACCACACGGGGCAGGACGGATCATGTCCCGCTCG 35602
Query 8924 AAAGCCAAAGAGAATATTAAACTAGAA-GACTTTCAAGATACTATGAAGGATGTATGGAC 8982
|||||| | | | | ||| ||| || ||| ||| || ||| |||| || ||| |
Sbjct 35601 AAAGCC-TTCAAATCAGTGGACTTGAAGGAATTTGAAGCGACGATGCAGGACGTCTGGTC 35543
Query 8983 AACTTCTGTAG--GTACTAGCACGATTGACGAAGCACCAATGGCATACAAACCAATGGAC 9040
| ||| || | | | |||| ||| || |||| | | |||||||| |||||
Sbjct 35542 GAGTTCGGTCGTCGAATCGACACG--TGATGAGTCACCGTTCGTCTACAAACCGATGGAA 35485
Query 9041 GAGATC 9046
|| |||
Sbjct 35484 GAAATC 35479
>seq149378
Length=35185
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/201 (69%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 127937 AACGCTCTACTGTTACAGAACCTTCGTACTTTAAGTAAACGTGTTCTTGTGGCATGATAG 127996
|||| || |||| ||| | ||| ||||||||| | |||||||| ||||||||||| |
Sbjct 32986 AACGTTCAACTGATACCGTACCCGTATACTTTAAGAATACGTGTTCATGTGGCATGATTG 32927
Query 127997 AACCGATTTGGTATACCCCAGTAGTACCAAAGCTACGCTCTGCTGAGATAGACTGAGCAC 128056
|||| | || || || || ||||| || || || | | | || |||||||
Sbjct 32926 AACCAAGTTCATACACACCTTGGGTACCGAATGAGCGGTCACCAGTTAATGATTGAGCAC 32867
Query 128057 GAGCAATCGGTACGTTCTTAATCATAAAGTATACTGTGTTACCAGTCTGTACCGTTTGGT 128116
|| |||| | ||||||||||||| | || | |||||| || | |||||||| |
Sbjct 32866 GACCAATAACTTCGTTCTTAATCATGATATAAATACGGTTACCGGTTTCAACCGTTTGCT 32807
Query 128117 TAGTTACAGATGCCATGTAGT 128137
| | | | |||||| ||||
Sbjct 32806 TTGCAAGTGTTGCCATATAGT 32786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 502192080475680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |