Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_031065.1 Length=159878 Score E Sequences producing significant alignments: (Bits) Value seq26767 194 2e-44 seq158858 91.5 2e-13 >seq26767 Length=1149 Score = 194 bits (214), Expect = 2e-44 Identities = 311/447 (70%), Gaps = 0/447 (0%) Strand=Plus/Plus Query 132573 CATCAAATCATTGATTTGCAGACCATAATCTAGATGACGAATACGGTTTTCATCTACACC 132632 |||||| | ||| ||||| | ||||||| | ||||| | | ||||| || | || Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92 Query 132633 TTTGTTGTTCTTTAATACAAGCAGGTTTTCAACTTCTAGATGCCACATTGGATAATAAAG 132692 | || || ||||| || | | |||||| ||| | |||||| ||||||||| | | Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152 Query 132693 AGTAGCTGCACCACCACGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATG 132752 ||| || || ||||| | || || ||||||||||| |||||||| ||| | |||||||| Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 212 Query 132753 TTTCCAAAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTC 132812 ||| |||||||||| |||||||| | |||||||||| | ||| ||| | Sbjct 213 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 272 Query 132813 AGCTCGAATCATACCGGCGTTGATGCCTATACCAGCTCGCTTGCTGATATACTTAATAAT 132872 || ||||| | || || || || || || || ||||| | | ||| || | ||| Sbjct 273 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 332 Query 132873 ACTGTTACTTGCCGCATTAATAGAATTCAGTGAATCGCCAGCTTCGATAACTACACAAGA 132932 | || | | || |||||||||| || ||| || ||| || | ||||| || Sbjct 333 AGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGA 392 Query 132933 ACTAAATTGACGAGTAGGAGTACGAGCCCCCGCCATAATTGGTGTAGGTAATGAAATCTG 132992 |||||||| ||||||||||| | | | || | |||||||||||| ||||| ||||| | Sbjct 393 GCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTT 452 Query 132993 TCGAGTAGATACAGCATCATAAAAGCG 133019 ||| || | |||| |||||| || Sbjct 453 GAAAGTTGAAATGGCATTATAAAAACG 479 >seq158858 Length=235449 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/161 (74%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 58424 TTGGCTGGGAATACTGGACTCGAACCAGTGCATCCCGGAATCAAAATCCGGTGCCTTACC 58483 |||||||||||| | || |||||| | ||||| || ||||| || ||||||||| Sbjct 162462 TTGGCTGGGAATGATAGATTCGAACTACCGCATCAGAGAGTCAAAGTCTCTTGCCTTACC 162403 Query 58484 AACTTGGCTAATTCCCAAT-TATTTGGTGGCCCTTGCTGGTTTCGATCCAGCTACCTATC 58542 ||||||||||||||||| || || |||| |||| | | |||| | | | |||| || Sbjct 162402 -GCTTGGCTAATTCCCAATATAATTAATGGCTCTTGATTGAATCGAACAATCGACCTCTC 162344 Query 58543 AGTTATGAGCTGACAGCTCT--CCCATTGAGCTAAAGGGCC 58581 ||||||| || ||||| || | |||||||||| ||| Sbjct 162343 CCTTATGAGGGGAACGCTCTAACCAACTGAGCTAAAGAGCC 162303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509773072437440