Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_031070.1 Length=162375 Score E Sequences producing significant alignments: (Bits) Value seq158858 98.7 1e-15 seq149378 96.9 4e-15 >seq158858 Length=235449 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 24655 CTACGCGACCTTTGTTAGATTTTTTAGTTCCATCATCCGTTTTAGGATTCTTCTGGATTA 24714 ||||||| || | |||||| |||||||||||||| ||||| |||| ||| | || Sbjct 214930 CTACGCGGCCACGTTGAGATTTCTTAGTTCCATCATCTGTTTTTGGATCCTTGAACAATA 214871 Query 24715 GTTTCTCTTCACCATTTACTTGAGCCCATGTCGCTTTCATCGCAAATCCTAAGGAATCGC 24774 ||||| ||||||||| ||| |||| |||||||| ||||| |||| ||||||| Sbjct 214870 AACGTTCTTCTCCATTTACTACAGCATATGTAGCTTTCATAGCAAACCCTAGAGAATCGC 214811 Query 24775 GGGTGTTGTACGCATAAGTGTAAGACCCTACGCCTAATACTACGTTT 24821 | || | || |||| ||||| || ||||| || || |||||| Sbjct 214810 GAGTCTGATATTGGAAAGTATAAGATCCCACGCCGAAAACAACGTTT 214764 >seq149378 Length=35185 Score = 96.9 bits (106), Expect = 4e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 35859 CTGGTGTAAATGGCGCTTGGAAGATTCCAGTTGTATCTGCTGAAGATGTAAACTTCATCA 35918 ||||| | ||||||||||||||| ||||| | | || | | |||||| || || | | Sbjct 23102 CTGGTATGAATGGCGCTTGGAAGGTTCCAATGATTTCAGGTCAAGATGCTAAGTTTGTTA 23161 Query 35919 ACATGACTCAGTCATCTAAAGATATGGAATTCGAAAGATGGTTAAACTACCTTATCAACG 35978 ||||||| ||| | ||| ||||||||||| |||| | || |||||||| || | | Sbjct 23162 ACATGACACAGACTAGTAAGGATATGGAATTTGAAAAGTTTTTGAACTACCTAATTTATG 23221 Query 35979 TTATGTGTAGTATTTTCGCAATTGACCCATCTGAGATTAACTTCCCTAACCGAGGAGGCG 36038 |||| | ||| | |||| | ||| || |||||||| ||||| || || || | Sbjct 23222 TTATTGCTGCCGTTTACCAAATTCAGCCAGAAGAAATTAACTTTCCTAATCGTGGGGGAG 23281 Query 36039 CTACAGGG 36046 |||| ||| Sbjct 23282 CTACTGGG 23289 Score = 87.8 bits (96), Expect = 2e-12 Identities = 192/282 (68%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 46173 ATGGCAAGTTTAGCTAACCAAACTGTCCAATCCGCAAATACCGTCT--ACTTCATGATTA 46230 ||||||| | || || ||||| || || ||| || |||| | | ||||||||| Sbjct 32791 ATGGCAACACTTGCAAAGCAAACGGTTGAAACCGGTAA--CCGTATTTATATCATGATTA 32848 Query 46231 AGAACGTACCAATCGCTCGTGCACAGTCAATCAGTTCAGAGCGTTCATTCGGTACAACTG 46290 |||||| | || | |||||| || ||| | | | || || ||||||||||| | Sbjct 32849 AGAACGAAGTTATTGGTCGTGCTCAATCATTAACTGGTGACCGCTCATTCGGTACCCAAG 32908 Query 46291 GTGTTTACGAGATTGGTTCTATCATGCCTAAAGAGCACGTTTACTTACGATATGAAGGTA 46350 |||| || || ||||||| |||||||| | || ||||| | |||| ||| |||| Sbjct 32909 GTGTGTATGAACTTGGTTCAATCATGCCACATGAACACGTATTCTTAAAGTATACGGGTA 32968 Query 46351 CTGTAACAGTTGACCGTTTCCGTATGCGTAAGGAGAACTTAGCTGCATTAG--GTTTCGC 46408 | ||| ||||||| |||| || | |||| | || | ||| || || | || | Sbjct 32969 CGGTATCAGTTGAACGTTATCGGTTACGTACTGGTAATATGTCTG-ATAAGAAGATT-AC 33026 Query 46409 CGCTCTTGGTGAAGAAGTATTACAAATGGATATCATGGACAT 46450 ||||| |||||||| || || | || |||||| | || || Sbjct 33027 TGCTCTAGGTGAAGATGTTTTGAAGATTGATATCTTAGATAT 33068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517736781704800