Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq249645 113 1e-20 >seq249645 Length=476466 Score = 113 bits (124), Expect = 1e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 40167 AAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATG 40226 |||||||| |||| |||||||| || |||||||| ||||| | ||| ||||| || | Sbjct 145029 AAGTCGATATCAAAATCGGGCATTGATACGCGCTCAGGGTTTAAGAAGCGCTCAAACAAT 144970 Query 40227 AGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAG-GCAGTAGGCGACCAGCGAACC 40285 || | | | || ||||| |||||||||||| || ||| |||||||| ||||| || Sbjct 144969 AGATCATAATGAATTGGGTCAAGGTCTGTGATGTTAAGCGCA-TAGGCGACAAGCGAGCC 144911 Query 40286 GGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40345 ||| | |||||||| || || || || ||||| || | || ||||||| || || Sbjct 144910 AGCACCAGAGCCACGACCTGGCCCCACAGGTACGCCATTGGCTTTTGCCCAGCGAATAAA 144851 Query 40346 GTCGGCGACGACCAGGAAGTA 40366 ||| ||||| | |||||| Sbjct 144850 GTCCATGACGATTAAGAAGTA 144830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159632619994784