Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_031087.1 Length=168272 Score E Sequences producing significant alignments: (Bits) Value seq26767 194 2e-44 >seq26767 Length=1149 Score = 194 bits (214), Expect = 2e-44 Identities = 316/455 (69%), Gaps = 0/455 (0%) Strand=Plus/Plus Query 141245 CATCAGGTTATTAATCTGAACGCCATAATCTAAATGACGAATACGGTTTTCATCTACACC 141304 ||||| |||||||| || || ||||||| | ||||| | | ||||| || | || Sbjct 33 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 92 Query 141305 TTTGTTGTTCTTAAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAG 141364 | || || || | || | | |||||| ||| || ||||| |||||||| | | Sbjct 93 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 152 Query 141365 TGTCGCCGCGCCACCACGGACTCCACCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTG 141424 || ||||| ||||| | ||||| ||||| || |||||||| || || |||| || || Sbjct 153 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 212 Query 141425 TTTCCAGAAAGGAATAACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGAACCCTC 141484 ||| | ||||||||| |||||||| |||| || || ||| ||| | Sbjct 213 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 272 Query 141485 GGCGCGAATCATGCCTGCATTAATACCAATACCTGCACGCTTACTGATGTATTTCGTAAT 141544 || ||||| | || |||||||||||||| ||||| || | | | ||||| ||| Sbjct 273 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 332 Query 141545 TGATGCAGCAGCTTCGTTAATTGAATTAAGACTATCACCACCTTCAATAACCACGCATGA 141604 || || || ||||||| |||| ||| ||||| ||| |||||| | || ||||| Sbjct 333 AGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGA 392 Query 141605 ACTGAACTGGCGTGTCGGAGTACGAACACCAGACATAATTGGTGTTGGCAATGAAATCTT 141664 || || || || || ||||| | ||| ||||||||||||||||| || || ||||| || Sbjct 393 GCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTT 452 Query 141665 TTTAGTAGAAACTGCATCATAGAAACGAATAACGT 141699 ||| |||| |||| ||| ||||| ||||| Sbjct 453 GAAAGTTGAAATGGCATTATAAAAACGCTGAACGT 487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 536544147964160