Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_031090.1 Length=169621 Score E Sequences producing significant alignments: (Bits) Value seq26767 170 2e-37 seq249645 100 3e-16 >seq26767 Length=1149 Score = 170 bits (188), Expect = 2e-37 Identities = 281/404 (70%), Gaps = 6/404 (1%) Strand=Plus/Minus Query 61696 CGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCTACTCCAATTATGGCAGGT 61755 ||||||||| ||||| |||| ||| || |||| || || || ||||||||| | || Sbjct 479 CGTTTTTATAATGCCATTTCAACTTTCAAAATTTCTTTACCGACACCAATTATGTCTGGA 420 Query 61756 GCTCGTACTCCGACTCGCCAGTTCTCTAGTT---GTGTAGTTATTGAAGCCGGTGATTCG 61812 | | | ||||| ||||| || || ||| | |||| | |||||| | |||| Sbjct 419 GTTAGAACTCCTACTCGACAATT---TAGCTCATGTGTTTTAATTGAATGTGATGATAAT 363 Query 61813 TTAAAATCTATTAACAAAACTTCAGCATCAATTATTGAATATATTTCTAAACGAGCTGGT 61872 || | ||||||||| ||| | || ||| | ||||| ||||| ||||||| || Sbjct 362 CTAGATTCTATTAACGCTACTACTAGTTCTATTGTAAAATATGTTTCTCAACGAGCAGGA 303 Query 61873 ATAGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGGCGAAGTT 61932 || ||||| || | ||| | ||||||||| |||| | || | | ||||||| Sbjct 302 ATTGGTATTAATGCTGGAAAAATTCGTGCAGTAGGTAGTCCTATTAGAAATGGCGAAGCA 243 Query 61933 CGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCT 61992 ||||| ||| |||||| || | |||||||| |||| ||| |||||||| |||||| Sbjct 242 TTTCATACTGGTTGTATTCCTTTTTATAAACATTTTCAAAGTGCTGTAAAATCCTGTTCT 183 Query 61993 CAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTA 62052 ||||| || || | ||||| || || || | |||||| || ||||| || ||| | Sbjct 182 CAAGGAGGAGTTAGAGGTGGAGCGGCAACTATATTTTATCCAATATGGCATTTTGAAATT 123 Query 62053 GAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAA 62096 || | |||||||| | |||||||| | ||| | || ||||| Sbjct 122 GAAAGTTTATTAGTTTTAAAAAATAATAGGGGCATTGAAGAAAA 79 >seq249645 Length=476466 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 61936 CATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCTCAA 61995 ||||| || |||||| || | ||| |||||||| || || |||| || || ||| Sbjct 264760 CATACTGGCTGTATTCCTTTTTATAAATTGTTCCAAACGGCCGTTAAATGCTGCTCACAA 264819 Query 61996 GGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTAGAG 62055 ||||| | ||||| |||||||| || || || || | ||||| |||||||| ||| Sbjct 264820 GGTGGCGTACGTGGCGGTGCTGCGACGTTGTTCTACCCACTATGGCATTTAGAAGTTGAG 264879 Query 62056 AACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATATGGAC 62115 || | || || ||||||||| || || || || |||||| | || ||||||||| Sbjct 264880 TCATTACTGGTACTCAAAAATAACCGCGGTGTTGAAGACAACCGTGTCCGTCATATGGAC 264939 Query 62116 TACGG 62120 ||||| Sbjct 264940 TACGG 264944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540846528341280