Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_031103.1
Length=165772
Score E
Sequences producing significant alignments: (Bits) Value
seq26767 230 2e-55
seq249645 132 5e-26
seq127984 89.7 5e-13
seq252826 84.2 2e-11
>seq26767
Length=1149
Score = 230 bits (254), Expect = 2e-55
Identities = 325/457 (71%), Gaps = 0/457 (0%)
Strand=Plus/Plus
Query 138409 ATTCAGTTGAACGCCATAATCCATATGACGAATACGGTTTTCTTCTACGCCTTTGTTATT 138468
||| | ||| || ||||||| | ||||| | | |||||||| | ||| | |||||
Sbjct 42 ATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTATT 101
Query 138469 TTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 138528
||| ||||| | | | |||||| ||| |||||||| || |||||| | ||| || ||
Sbjct 102 TTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCCGC 161
Query 138529 GCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAA 138588
|| || | || ||| || || || || ||||| |||||| | ||||||||||| ||||
Sbjct 162 TCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATGTTTATAAAA 221
Query 138589 AGGAATAACACCAGTATGACGTACTTCACCTGTACCAATCTTAGAACCTTCGGCACGAAT 138648
||||||| |||||||||| | |||| || | | ||| | |||| | ||||||||
Sbjct 222 AGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGCACGAAT 281
Query 138649 CATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGAAGCAGA 138708
| ||| | |||||||||||||| || |||| || | ||||| ||||| ||| ||
Sbjct 282 TTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACTAGT 341
Query 138709 AGCTTTGTTAATAGACTTCAGCGAATCACCTGCTTCAATAACAACGCATGAACTAAACTG 138768
|| ||||||||| | || |||| | |||||| | ||| ||||| ||||| ||
Sbjct 342 AGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGAGCTAAATTG 401
Query 138769 CCGAGTTGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAATCTGTCGAGTAGA 138828
||||| ||||| | | |||| |||||| || || ||||| ||||| | ||| ||
Sbjct 402 TCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTTGAAAGTTGA 461
Query 138829 TACCGCTTCATAAAAACGAATAACGTGTTTTAATCTA 138865
| || | ||||||||| ||||| || | ||||
Sbjct 462 AATGGCATTATAAAAACGCTGAACGTAATTCATTCTA 498
>seq249645
Length=476466
Score = 132 bits (146), Expect = 5e-26
Identities = 272/402 (68%), Gaps = 2/402 (0%)
Strand=Plus/Minus
Query 138416 TGAACGCCATAATCCATATGACGAATACGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 138475
|| ||||| || ||||||||||| | |||||| ||||| || || ||||||||| |
Sbjct 264950 TGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGT 264891
Query 138476 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 138535
|| || | |||||||| |||||||| | || || | || ||||| ||||||
Sbjct 264890 ACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCA 264831
Query 138536 CGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAATA 138595
|| | ||||| |||||||| ||||||| || || || || ||| |||||||||||
Sbjct 264830 CGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAATA 264771
Query 138596 ACACCAGTATGACGTACTTCACCTGTACCAATCTTAGAACCTTCGGCACGAATCATACCA 138655
|||||||| || ||||||| || || ||| |||||| || |||
Sbjct 264770 CAGCCAGTATGCTGTGCTTCACCGCCACGGATAGGGCTACCAAGGGCACGGATACGACCT 264711
Query 138656 ACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGAAGCAGAAGCTTTG 138715
|||| || || || ||||| || | || | ||| || || | || | |
Sbjct 264710 GCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGTGGTGGCG 264651
Query 138716 TTAATAGACT-TCAGCGAATCACCTGCTTCAATAACAACGCATGAACTAAACTGCCGAGT 138774
|| ||||| | | ||| |||||| ||| || | ||||| || |||||||| || |
Sbjct 264650 TTGATAGAGTCTAAGC-TATCACCACATTCGATTAAGACGCACGAGCTAAACTGACGCGA 264592
Query 138775 TGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAAT 138816
||| ||||| ||| | ||| || || ||||||| ||| ||
Sbjct 264591 TGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGAT 264550
>seq127984
Length=21361
Score = 89.7 bits (98), Expect = 5e-13
Identities = 69/82 (84%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 70397 TAAATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAAT 70456
||||||||||||| | | ||||||||||||| ||||||||| ||||||| ||||||| |
Sbjct 19915 TAAATTGGAGCGGGTGAAGAGAATCGAACTCTCATCATCAGCTTGGAAGGCTGAGGTTTT 19856
Query 70457 ACCATTATACGATATCCGCAAA 70478
|||| || || | | |||||||
Sbjct 19855 ACCACTAAACTACACCCGCAAA 19834
>seq252826
Length=193385
Score = 84.2 bits (92), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 70145 TGGTGCTGATTGACGGAATCGAACCGCCGACCTTCTCATTACAAGTGAGTTGCTCTACCT 70204
|||||| || || ||| ||||||| | |||||| || ||||||||| ||||||||||||
Sbjct 192022 TGGTGCCGACTGCCGGGATCGAACTGGCGACCTACTGATTACAAGTCAGTTGCTCTACCA 191963
Query 70205 ACTGAGCTAAATCAGC 70220
|||||||||| || ||
Sbjct 191962 ACTGAGCTAAGTCGGC 191947
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 528570870764160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |