Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_031103.1 Length=165772 Score E Sequences producing significant alignments: (Bits) Value seq26767 230 2e-55 seq249645 132 5e-26 seq127984 89.7 5e-13 seq252826 84.2 2e-11 >seq26767 Length=1149 Score = 230 bits (254), Expect = 2e-55 Identities = 325/457 (71%), Gaps = 0/457 (0%) Strand=Plus/Plus Query 138409 ATTCAGTTGAACGCCATAATCCATATGACGAATACGGTTTTCTTCTACGCCTTTGTTATT 138468 ||| | ||| || ||||||| | ||||| | | |||||||| | ||| | ||||| Sbjct 42 ATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTATT 101 Query 138469 TTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 138528 ||| ||||| | | | |||||| ||| |||||||| || |||||| | ||| || || Sbjct 102 TTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCCGC 161 Query 138529 GCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAA 138588 || || | || ||| || || || || ||||| |||||| | ||||||||||| |||| Sbjct 162 TCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATGTTTATAAAA 221 Query 138589 AGGAATAACACCAGTATGACGTACTTCACCTGTACCAATCTTAGAACCTTCGGCACGAAT 138648 ||||||| |||||||||| | |||| || | | ||| | |||| | |||||||| Sbjct 222 AGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGCACGAAT 281 Query 138649 CATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGAAGCAGA 138708 | ||| | |||||||||||||| || |||| || | ||||| ||||| ||| || Sbjct 282 TTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACTAGT 341 Query 138709 AGCTTTGTTAATAGACTTCAGCGAATCACCTGCTTCAATAACAACGCATGAACTAAACTG 138768 || ||||||||| | || |||| | |||||| | ||| ||||| ||||| || Sbjct 342 AGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGAGCTAAATTG 401 Query 138769 CCGAGTTGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAATCTGTCGAGTAGA 138828 ||||| ||||| | | |||| |||||| || || ||||| ||||| | ||| || Sbjct 402 TCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTTGAAAGTTGA 461 Query 138829 TACCGCTTCATAAAAACGAATAACGTGTTTTAATCTA 138865 | || | ||||||||| ||||| || | |||| Sbjct 462 AATGGCATTATAAAAACGCTGAACGTAATTCATTCTA 498 >seq249645 Length=476466 Score = 132 bits (146), Expect = 5e-26 Identities = 272/402 (68%), Gaps = 2/402 (0%) Strand=Plus/Minus Query 138416 TGAACGCCATAATCCATATGACGAATACGGTTTTCTTCTACGCCTTTGTTATTTTTCAAA 138475 || ||||| || ||||||||||| | |||||| ||||| || || ||||||||| | Sbjct 264950 TGTACGCCGTAGTCCATATGACGGACACGGTTGTCTTCAACACCGCGGTTATTTTTGAGT 264891 Query 138476 ACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCA 138535 || || | |||||||| |||||||| | || || | || ||||| |||||| Sbjct 264890 ACCAGTAATGACTCAACTTCTAAATGCCATAGTGGGTAGAACAACGTCGCAGCACCGCCA 264831 Query 138536 CGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAAAGGAATA 138595 || | ||||| |||||||| ||||||| || || || || ||| ||||||||||| Sbjct 264830 CGTACGCCACCTTGTGAGCAGCATTTAACGGCCGTTTGGAACAATTTATAAAAAGGAATA 264771 Query 138596 ACACCAGTATGACGTACTTCACCTGTACCAATCTTAGAACCTTCGGCACGAATCATACCA 138655 |||||||| || ||||||| || || ||| |||||| || ||| Sbjct 264770 CAGCCAGTATGCTGTGCTTCACCGCCACGGATAGGGCTACCAAGGGCACGGATACGACCT 264711 Query 138656 ACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACAATTGAAGCAGAAGCTTTG 138715 |||| || || || ||||| || | || | ||| || || | || | | Sbjct 264710 GCGTTGATGCCGATACCAGCACGCTGTGACACATAGCGTACGATGGCGCTAGTGGTGGCG 264651 Query 138716 TTAATAGACT-TCAGCGAATCACCTGCTTCAATAACAACGCATGAACTAAACTGCCGAGT 138774 || ||||| | | ||| |||||| ||| || | ||||| || |||||||| || | Sbjct 264650 TTGATAGAGTCTAAGC-TATCACCACATTCGATTAAGACGCACGAGCTAAACTGACGCGA 264592 Query 138775 TGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAAT 138816 ||| ||||| ||| | ||| || || ||||||| ||| || Sbjct 264591 TGGCGTACGCACACCTGACATGATTGGCGTTGGTAGTGAGAT 264550 >seq127984 Length=21361 Score = 89.7 bits (98), Expect = 5e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 70397 TAAATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAAT 70456 ||||||||||||| | | ||||||||||||| ||||||||| ||||||| ||||||| | Sbjct 19915 TAAATTGGAGCGGGTGAAGAGAATCGAACTCTCATCATCAGCTTGGAAGGCTGAGGTTTT 19856 Query 70457 ACCATTATACGATATCCGCAAA 70478 |||| || || | | ||||||| Sbjct 19855 ACCACTAAACTACACCCGCAAA 19834 >seq252826 Length=193385 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 70145 TGGTGCTGATTGACGGAATCGAACCGCCGACCTTCTCATTACAAGTGAGTTGCTCTACCT 70204 |||||| || || ||| ||||||| | |||||| || ||||||||| |||||||||||| Sbjct 192022 TGGTGCCGACTGCCGGGATCGAACTGGCGACCTACTGATTACAAGTCAGTTGCTCTACCA 191963 Query 70205 ACTGAGCTAAATCAGC 70220 |||||||||| || || Sbjct 191962 ACTGAGCTAAGTCGGC 191947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 528570870764160