Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04]
267,228 sequences; 342,306,570 total letters
Query= NC_031116.1
Length=163345
Score E
Sequences producing significant alignments: (Bits) Value
seq149378 87.8 2e-12
>seq149378
Length=35185
Score = 87.8 bits (96), Expect = 2e-12
Identities = 192/282 (68%), Gaps = 8/282 (3%)
Strand=Plus/Plus
Query 46858 ATGGCAAGTTTAGCTAACCAAACTGTCCAATCCGCAAATACCGTCT--ACTTCATGATTA 46915
||||||| | || || ||||| || || ||| || |||| | | |||||||||
Sbjct 32791 ATGGCAACACTTGCAAAGCAAACGGTTGAAACCGGTAA--CCGTATTTATATCATGATTA 32848
Query 46916 AGAACGTACCAATCGCTCGTGCACAGTCAATCAGTTCAGAGCGTTCATTCGGTACAACTG 46975
|||||| | || | |||||| || ||| | | | || || ||||||||||| |
Sbjct 32849 AGAACGAAGTTATTGGTCGTGCTCAATCATTAACTGGTGACCGCTCATTCGGTACCCAAG 32908
Query 46976 GTGTTTACGAGATTGGTTCTATCATGCCTAAAGAGCACGTTTACTTACGATATGAAGGTA 47035
|||| || || ||||||| |||||||| | || ||||| | |||| ||| ||||
Sbjct 32909 GTGTGTATGAACTTGGTTCAATCATGCCACATGAACACGTATTCTTAAAGTATACGGGTA 32968
Query 47036 CTGTAACAGTTGACCGTTTCCGTATGCGTAAGGAGAACTTAGCTGCATTAG--GTTTCGC 47093
| ||| ||||||| |||| || | |||| | || | ||| || || | || |
Sbjct 32969 CGGTATCAGTTGAACGTTATCGGTTACGTACTGGTAATATGTCTG-ATAAGAAGATT-AC 33026
Query 47094 CGCTCTTGGTGAAGAAGTATTACAAATGGATATCATGGACAT 47135
||||| |||||||| || || | || |||||| | || ||
Sbjct 33027 TGCTCTAGGTGAAGATGTTTTGAAGATTGATATCTTAGATAT 33068
Score = 82.4 bits (90), Expect = 8e-11
Identities = 133/189 (70%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 36311 CTGGTGTAAATGGTGCTTGGAAGATTCCAGTTGTATCTGCTGAAGATGTAAACTTCATCA 36370
||||| | ||||| ||||||||| ||||| | | || | | |||||| || || | |
Sbjct 23102 CTGGTATGAATGGCGCTTGGAAGGTTCCAATGATTTCAGGTCAAGATGCTAAGTTTGTTA 23161
Query 36371 ATATGACTCAGTCGTCTAAAGATATGGAATTCGAAAGATGGTTAAACTACCTTATCAACG 36430
| ||||| ||| | ||| ||||||||||| |||| | || |||||||| || | |
Sbjct 23162 ACATGACACAGACTAGTAAGGATATGGAATTTGAAAAGTTTTTGAACTACCTAATTTATG 23221
Query 36431 TTATGTGTAGTATTTTTGC-AATCGACCCATCTGAGATTAACTTCCCTAACCGAGGCGGC 36489
|||| || | ||| | ||| | ||| || |||||||| ||||| || || ||
Sbjct 23222 TTAT-TGCTGCCGTTTACCAAATTCAGCCAGAAGAAATTAACTTTCCTAATCGTGGGGGA 23280
Query 36490 GCTACAGGG 36498
||||| |||
Sbjct 23281 GCTACTGGG 23289
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 520830413258400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |