Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= NC_031125.1 Length=41005 Score E Sequences producing significant alignments: (Bits) Value seq179560 657 0.0 seq235932 540 3e-149 seq205109 471 1e-128 seq245411 342 1e-89 seq260089 251 2e-62 seq35014 251 2e-62 seq262176 131 4e-26 seq53622 114 3e-21 seq133537 98.7 3e-16 seq106902 96.9 9e-16 seq165740 95.1 3e-15 >seq179560 Length=631 Score = 657 bits (728), Expect = 0.0 Identities = 456/517 (88%), Gaps = 0/517 (0%) Strand=Plus/Plus Query 17502 ATATTGGCACGTATAGCGACTTCACACAGGCAGACAGCACTAATCCGGCTGATTACAACT 17561 ||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| | Sbjct 1 ATATTGGCACGTACAGCGACTTCACACAGGCAGACAGTACCAATCCGGCTGATTACAATT 60 Query 17562 GGGCGCTTTTTAAAGGTGAAGACGGTGATGTGGGACCCAAAGGTGATCAAGGTTTGCCCG 17621 |||||||||||||||| | || ||||| ||||| || ||||| |||||||||||| | | Sbjct 61 GGGCGCTTTTTAAAGGGGCTGATGGTGACGTGGGGCCAAAAGGCGATCAAGGTTTGACTG 120 Query 17622 GTGCCAAGGGTGCCGATGGTCGTACTGCCTATACTCACTTTGCTTACGCAAATAGTCAAG 17681 |||| |||||||||||||| |||||||||||| | ||||||||||||||||| || |||| Sbjct 121 GTGCTAAGGGTGCCGATGGCCGTACTGCCTATGCCCACTTTGCTTACGCAAACAGCCAAG 180 Query 17682 ATGGGAAGACCGACTTTTCAACAACTGATTCTAATCGCAAGTACATTGGTTTCTACAGCG 17741 | || | ||||||| ||||| ||||||||||| || ||||||||||| || ||||| | Sbjct 181 ACGGCCATGCCGACTTCTCAACCACTGATTCTAACCGTAAGTACATTGGCTTTTACAGTG 240 Query 17742 ACTTCACATCTGGCGACAGCACGAATCCAAGCGACTATAACTGGTCGCTAATCAAGGGCG 17801 ||||||||||||| |||||||| |||||||| ||||||||||||||||| || || || | Sbjct 241 ACTTCACATCTGGTGACAGCACAAATCCAAGTGACTATAACTGGTCGCTCATTAAAGGTG 300 Query 17802 CTGATGGTGCGAATGGTAAAGATGGGGTGCCGGGTAAAGCAGGTGCCGATGGCAAGACAT 17861 | |||||||| |||||||||||||||||||||||||||| ||||| ||||| || ||| Sbjct 301 CGGATGGTGCTGATGGTAAAGATGGGGTGCCGGGTAAAGCCGGTGCAGATGGTAAAACAC 360 Query 17862 CGTACTTCCATATTGCCTATGCCGATAGCAGTGACGGTATAACGAACTTTTCGCTCGATA 17921 | |||||||||||||||||||| || |||||||| |||| |||||||||||||||||||| Sbjct 361 CTTACTTCCATATTGCCTATGCTGACAGCAGTGATGGTAGAACGAACTTTTCGCTCGATA 420 Query 17922 CTCCTGGTTCTAGAAAATACATTGGTAGTTATACAGACTTCACGCAAGCCGATAGCACAA 17981 |||| || ||| | || |||||||||||||||||||||||||||||||| || || |||| Sbjct 421 CTCCGGGCTCTCGCAAGTACATTGGTAGTTATACAGACTTCACGCAAGCTGACAGTACAA 480 Query 17982 ATCCAGAACTTTATTCTTGGCAATTGGTACAAGGGCC 18018 |||||| |||||||||||||||||||||||||||||| Sbjct 481 ATCCAGCACTTTATTCTTGGCAATTGGTACAAGGGCC 517 >seq235932 Length=369 Score = 540 bits (598), Expect = 3e-149 Identities = 341/369 (92%), Gaps = 0/369 (0%) Strand=Plus/Plus Query 39620 CAAAACGGCTTGGCATCGAGTTTCAAAAGCCACTGAAGAATGAATATGATTCAGACGGAA 39679 ||| ||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 1 CAAGACGGCTTGGTGTCGAGTTCCAAAAGCCACTGAAGAATGAATACGATTCAGACGGAA 60 Query 39680 CACAGTCCAGTGAGACTATCCTAAAGGTTGTCAGGGGTCACAAAATGACGCCTAGAGAGG 39739 |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 61 CACAATCCAGTGAGACGATCCTAAAAGTTGTCAGGGGTCACAAAATGACGCCTAGAGAGG 120 Query 39740 TTTTGGAAGCTCACGGGTATGATTACAACAAATGGGAACTTTTGCGTGCCACAAGCAATT 39799 ||||||||||||||||||| ||||||| ||| ||||| ||| | |||||||||||||||| Sbjct 121 TTTTGGAAGCTCACGGGTACGATTACACCAAGTGGGAGCTTGTACGTGCCACAAGCAATT 180 Query 39800 TCTGGAAGCAGACGCCTGAAGCGACATTGTATCAAAGCAAGATACAAATTAGGCCGTTAG 39859 | ||||||||||||||||||||||||||||||||||| ||||||||||| || ||| ||| Sbjct 181 TTTGGAAGCAGACGCCTGAAGCGACATTGTATCAAAGTAAGATACAAATCAGACCGCTAG 240 Query 39860 TTGAGGCGGAACAATATGAATCATTGATGAATGACATCATCACACACAAGGAGCCGTATC 39919 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TTGAGGCTGAACAATATGAATCATTGATGAATGACATCATCACACACAAGGAGCCGTATC 300 Query 39920 AAGCCAAGGCTCCTATTTTTGTGGAATCAGATCGCTATTTAGTCATTCCTGCGTTTGATA 39979 |||| | ||||||||||||||||||||||||||||||| | | ||||||||| || |||| Sbjct 301 AAGCAAGGGCTCCTATTTTTGTGGAATCAGATCGCTATCTGGCCATTCCTGCTTTCGATA 360 Query 39980 CACACTTCA 39988 |||| |||| Sbjct 361 CACATTTCA 369 >seq205109 Length=712 Score = 471 bits (522), Expect = 1e-128 Identities = 306/336 (91%), Gaps = 0/336 (0%) Strand=Plus/Plus Query 40318 AACATCACTTGGGACATATCACTTAAGCATTACAAAGGTGCAATGTTAGGCCGCAACTTC 40377 || || |||||||||||||| || |||||||||||||| ||||||||||||| ||||||| Sbjct 5 AATATTACTTGGGACATATCGCTGAAGCATTACAAAGGCGCAATGTTAGGCCACAACTTC 64 Query 40378 ATTGGTGCCACTCACGGAGACAAGGGCAAGAACAACTACCTTGCAAAATACCTAGATGAG 40437 ||||||||||||||||||||||||||||||||||| ||||| |||||||| || |||||| Sbjct 65 ATTGGTGCCACTCACGGAGACAAGGGCAAGAACAATTACCTCGCAAAATATCTCGATGAG 124 Query 40438 TTTGGATTCATGCTAGGCACAGCACAGAATCGCGAACTGTTCACGGGGCATCTCCATTCA 40497 ||||| |||||| |||||||||||||||||||||||||||| ||||| ||||| |||||| Sbjct 125 TTTGGCTTCATGTTAGGCACAGCACAGAATCGCGAACTGTTTACGGGACATCTGCATTCA 184 Query 40498 GAGATGAGCAAAGACCTAGGCGGATTCGTTCAGCGTCAAGTGTCAACGCGCAAGCCAACC 40557 ||||||||||||||||||||||||||||||||||||||||| || || |||||||||| | Sbjct 185 GAGATGAGCAAAGACCTAGGCGGATTCGTTCAGCGTCAAGTATCGACACGCAAGCCAAAC 244 Query 40558 GATCAGTGGACTGATGACATTGGCGTGGTTGCTCACAAAACGTTTGAGCTGGTCGAATAC 40617 || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 245 GACAAGTGGACTGATGATATTGGCGTGGTTGCTCACAAAACGTTTGAGCTGGTCGAATAT 304 Query 40618 AGCGATCATGATACGAGGGCGATCTACTATGTCTAA 40653 ||||| ||||||||||||| |||||||| ||| Sbjct 305 TCGGATCACAATACGAGGGCGATTTACTATGTTTAA 340 >seq245411 Length=596 Score = 342 bits (378), Expect = 1e-89 Identities = 210/224 (94%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 36693 ATTAAGGAGAAAAAATCATGAATAAAAAATTGACATTTACAGTAACTGTTTTAGCAGGAC 36752 ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 549 ATTAAGGAGGAAAAATCATGAATAAAAAATTGACATTTACAGTAACTGTTTTGGCAGGAC 490 Query 36753 TTATGTTTGGGGCCGGTGCAACCACCATTGCCGACAATGTTTGGCAAGGTCACCAGAACA 36812 |||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 489 TTATGTTTGGAGCTGGTGCAACCGCCATTGCCGACAATGTTTGGCAAGGTCACCAGAACA 430 Query 36813 TCGTGGAGACCAAAAACAATATCGACAAGCTGACGGCTAAGATCAACGCTTCAAAATCTA 36872 ||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||| Sbjct 429 TCGTGGAGACCAAAAACAATATCGACAAGCTGATGGCTAAGATCAACGATTCACAATCTA 370 Query 36873 GCTTGTCCGATTTGCAACATCAGTTGTCCGATGTGCGGACGCAG 36916 |||||||||||||||||||||||||||| || | || | | ||| Sbjct 369 GCTTGTCCGATTTGCAACATCAGTTGTCTGACGCGCAGGCACAG 326 >seq260089 Length=267 Score = 251 bits (278), Expect = 2e-62 Identities = 147/152 (97%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 38039 TTTCCGTCATATTATTGTATTGTGCCAAAGGTGAGAAACCTGAGACACCGCGTTTTTCCT 38098 |||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 25 TTTCCGCCATATGATTGTATTGTGCCAAAGGTGAGACACCTGAGACACCGCGTTTTTCCT 84 Query 38099 CCGAGCCATGGTGATGATAAAGCTGTGGCAAGGCGTGGCAATGAGGACTGACCGTGATAG 38158 |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 85 CCGAGCCATGGTGATGATAAAGCTGTGGCAAGGCGTGGCAATGAGGACTGACTGCGATAG 144 Query 38159 TCAGGCGGGTTCGATTCCCGCATGCCACATTG 38190 |||||||||||||||||||||||||||||||| Sbjct 145 TCAGGCGGGTTCGATTCCCGCATGCCACATTG 176 >seq35014 Length=388 Score = 251 bits (278), Expect = 2e-62 Identities = 175/199 (88%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 39483 TTATATTTCAGGAGGCGAGTAGATGCAATGGACAGATGAACAAATTAGTGGCATTAGGAA 39542 ||| |||| |||||||||||||||||||||||||||||||| || |||| ||||||||| Sbjct 54 TTAAATTTTCGGAGGCGAGTAGATGCAATGGACAGATGAACAGATCAGTGACATTAGGAA 113 Query 39543 GCTCGCCTCTGAAGGCTTTACCAGACGAGAAACGGCTGACAAGCTCGGGATTAGCTATGA 39602 ||||||||||||||||||||||||||| || |||| || |||||||| ||||||||||| Sbjct 114 GCTCGCCTCTGAAGGCTTTACCAGACGCGAGGCGGCAGATAAGCTCGGAATTAGCTATGA 173 Query 39603 TGCGTTGCAGGGCAAAGCAAAACGGCTTGGCATCGAGTTTCAAAAGCCACTGAAGAATGA 39662 ||| | || || ||||||| |||||||||||||||||||||||| ||||| || ||||| Sbjct 174 CGCGCTTCAAGGTAAAGCAAGACGGCTTGGCATCGAGTTTCAAAAACCACTAAAAAATGA 233 Query 39663 ATATGATTCAGACGGAACA 39681 ||| ||||||| ||| ||| Sbjct 234 ATACGATTCAGGCGGCACA 252 >seq262176 Length=464 Score = 131 bits (144), Expect = 4e-26 Identities = 80/85 (94%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 38174 TCCCGCATGCCACATTGTCCAGTTTCGCGACCGGACACAGCTTGCGATGACCCCATCTGA 38233 |||| | ||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 20 TCCCACCGGCCTCATTGTCCAGTTTAGCGACCGGACACAGCTTGCGATGACCCCATCTGA 79 Query 38234 CACTGGGAGAGCGAGCAGCAACTGA 38258 ||||||||||||||||||||||||| Sbjct 80 CACTGGGAGAGCGAGCAGCAACTGA 104 >seq53622 Length=425 Score = 114 bits (126), Expect = 3e-21 Identities = 71/75 (95%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 19536 GATCAATACAAGCAAATTACAGGCAGTGACTATGTCGCCAGCAAAAGCTAGCGGCTATTT 19595 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 226 GACCAATACAAACAAATTACAGGCAGTGACTATGTCGCCAGCAAAAGCTAGCGGCTATTT 167 Query 19596 TTATGGAA-GGAAGT 19609 || ||||| |||||| Sbjct 166 TTGTGGAATGGAAGT 152 >seq133537 Length=297 Score = 98.7 bits (108), Expect = 3e-16 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 40658 ATGAAGCGAGTCGGATACGGCTACGTATGCAATACAGAGCAAGCAATCATTGAGAAACTA 40717 ||||||||||| | |||||| || || ||| ||| || || |||| ||||| || || Sbjct 189 ATGAAGCGAGTTGAATACGGATATGTGAGCAGTACTGAACAGACAATAATTGAAGAATTA 248 Query 40718 TCGAGAGAAGAAAAACACATGCAAGCATTTATCTACACGAAGCC 40761 ||||||||||| ||||||||||| || | |||||||||||||| Sbjct 249 TCGAGAGAAGAGAAACACATGCAGGCGATCATCTACACGAAGCC 292 >seq106902 Length=406 Score = 96.9 bits (106), Expect = 9e-16 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 21418 TCTGGTGACAGCTTCTGGAGTATTGCCAGCAAGTATGGCATCAGCATGTACACACTGGCA 21477 ||||||||||| | ||| ||||| |||||||||||| |||||||| || |||| Sbjct 103 TCTGGTGACAGTTGGTGGTCGATTGCTTACAAGTATGGCATGAGCATGTATACTTTGGCT 44 Query 21478 GCCAACAATGGCAAGTCAATCTACAGTTTGATTTACCCAGG 21518 | ||||||||||||||||| |||||| ||||| ||||||| Sbjct 43 TCTAACAATGGCAAGTCAATATACAGTGTGATTCACCCAGG 3 >seq165740 Length=350 Score = 95.1 bits (104), Expect = 3e-15 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 36932 ATGATTGCCGTCATGCTGCTAATCTCAGGTGCTTCAATATGGGTGTGGGCTAACTGGAGA 36991 ||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||| | Sbjct 310 ATGATTGCCGTCATGCTGCTAATCTCAGGTGCTGCAATGTGGATGTGGGCTAACTGGAAA 251 Query 36992 AG 36993 || Sbjct 250 AG 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130678393879912